| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633299
Identifier: 221633299
GI number: 221633299
Start: 1310948
End: 1311928
Strand: Reverse
Name: 221633299
Synonym: trd_1319
Alternate gene names: NA
Gene position: 1311928-1310948 (Counterclockwise)
Preceding gene: 221633300
Following gene: 221633298
Centisome position: 65.5
GC content: 61.57
Gene sequence:
>981_bases ATGGTCTGGTTCCGGAAAGGAAAAGGCCAAGCGACGCGTCGCTTGGCGCTCTACTATACGAGTGACATACACGGTTCGGA GCGATGTTTTCTGAAGTTCCTCAACGCAGCGAAGTTCTATGGTGTGGACACACTCATTCTCGGTGGTGATTTGACCGGGA AAGTGCTCGTTCCGATCGTGGAGGTCGATGGCCACTGGGAGATGTCTTTCCTCGGACGGCACGAAGTACTGCGGTCGCTG GAGGAGGTGACAGAAGCCGAGAAGCGTATCCGTTTCAACGGGTTCTATCCGTACCGCTGCGGACTAGAGGAGTTGGCCCG ACTGGAAGCGGATCGAGACTATGCCGACGCAGTCTTTCGGCGCCTGATGCGCGAGTCGGTCGCGCGCTGGGTCCGCCTCG CTGAGGAACGCTTGCGCGGAACCGGTGTGCGCTGCTTCGTCATGCCAGGGAACGATGACGAGTTCGACATCGACGACGCT CTCGCCGGAAGCGACGTCGTCGTCAACCCCGATGGCGCGATCGTGGAAATCGACGGATATCAACTGCTGAGTCTCGCCTG GGCGAATCCGACCCCATGGAACAGCCCGCGCGAGCTCCCGGAGGAAGAGCTGGCAGCGCGCATCGAGAGACTCGCCCGCG AGTTGGATCCGAGTCTGCCGGTGATCTTCAACCTGCACTGCCCACCCTATGACTCAACGCTGGACAGTGCGCCGCAGCTG CGGGAGGACCTCTCGGTCGTGATGGTGGGCGGACAACCGAACATGATTCCGGTGGGGAGCCGCGCCGTGCGCGAGGCGAT CGAGCGGTACCAACCGGTTTTGAGTCTGCATGGGCATATCCACGAGTCGCGCGGAGCCGTGCGCATCGGTCGGACACTGT GCATCAATCCCGGTTCGGCCTACGGTGAGGGAGTCCTTCATGGAGCGCTCGTCCGATTGGAGGACGATCGCGTGGCCAGC TATCAGCTCGTGAGCGGGTGA
Upstream 100 bases:
>100_bases TGGAAACTGCGCGCGATGATCGGTGAACGAAAGCGCTGGTACGAGTTGCCGGAGGAAGTCCGGCGCGACTGAGCACCGGT CTGGGCAGGACGGGAGTGAC
Downstream 100 bases:
>100_bases ACACGATGCGGGTGTACGACATTTCGCACCCGATCGAGTCGGACATGCTGGTTTTCCCCGGTGATCCCGAGGTGTGTCTG GAAACGGTAGCAGCCTCGGC
Product: Ser/Thr protein phosphatase family protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 326; Mature: 326
Protein sequence:
>326_residues MVWFRKGKGQATRRLALYYTSDIHGSERCFLKFLNAAKFYGVDTLILGGDLTGKVLVPIVEVDGHWEMSFLGRHEVLRSL EEVTEAEKRIRFNGFYPYRCGLEELARLEADRDYADAVFRRLMRESVARWVRLAEERLRGTGVRCFVMPGNDDEFDIDDA LAGSDVVVNPDGAIVEIDGYQLLSLAWANPTPWNSPRELPEEELAARIERLARELDPSLPVIFNLHCPPYDSTLDSAPQL REDLSVVMVGGQPNMIPVGSRAVREAIERYQPVLSLHGHIHESRGAVRIGRTLCINPGSAYGEGVLHGALVRLEDDRVAS YQLVSG
Sequences:
>Translated_326_residues MVWFRKGKGQATRRLALYYTSDIHGSERCFLKFLNAAKFYGVDTLILGGDLTGKVLVPIVEVDGHWEMSFLGRHEVLRSL EEVTEAEKRIRFNGFYPYRCGLEELARLEADRDYADAVFRRLMRESVARWVRLAEERLRGTGVRCFVMPGNDDEFDIDDA LAGSDVVVNPDGAIVEIDGYQLLSLAWANPTPWNSPRELPEEELAARIERLARELDPSLPVIFNLHCPPYDSTLDSAPQL REDLSVVMVGGQPNMIPVGSRAVREAIERYQPVLSLHGHIHESRGAVRIGRTLCINPGSAYGEGVLHGALVRLEDDRVAS YQLVSG >Mature_326_residues MVWFRKGKGQATRRLALYYTSDIHGSERCFLKFLNAAKFYGVDTLILGGDLTGKVLVPIVEVDGHWEMSFLGRHEVLRSL EEVTEAEKRIRFNGFYPYRCGLEELARLEADRDYADAVFRRLMRESVARWVRLAEERLRGTGVRCFVMPGNDDEFDIDDA LAGSDVVVNPDGAIVEIDGYQLLSLAWANPTPWNSPRELPEEELAARIERLARELDPSLPVIFNLHCPPYDSTLDSAPQL REDLSVVMVGGQPNMIPVGSRAVREAIERYQPVLSLHGHIHESRGAVRIGRTLCINPGSAYGEGVLHGALVRLEDDRVAS YQLVSG
Specific function: Unknown
COG id: COG2129
COG function: function code R; Predicted phosphoesterases, related to the Icc protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR004843 [H]
Pfam domain/function: PF00149 Metallophos [H]
EC number: NA
Molecular weight: Translated: 36578; Mature: 36578
Theoretical pI: Translated: 5.16; Mature: 5.16
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.5 %Cys (Translated Protein) 1.8 %Met (Translated Protein) 3.4 %Cys+Met (Translated Protein) 1.5 %Cys (Mature Protein) 1.8 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MVWFRKGKGQATRRLALYYTSDIHGSERCFLKFLNAAKFYGVDTLILGGDLTGKVLVPIV CCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEE EVDGHWEMSFLGRHEVLRSLEEVTEAEKRIRFNGFYPYRCGLEELARLEADRDYADAVFR EECCCEEHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHH RLMRESVARWVRLAEERLRGTGVRCFVMPGNDDEFDIDDALAGSDVVVNPDGAIVEIDGY HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEECCCCCEEEECCE QLLSLAWANPTPWNSPRELPEEELAARIERLARELDPSLPVIFNLHCPPYDSTLDSAPQL EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH REDLSVVMVGGQPNMIPVGSRAVREAIERYQPVLSLHGHIHESRGAVRIGRTLCINPGSA HCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCC YGEGVLHGALVRLEDDRVASYQLVSG CCCHHHEEEEEEEECCCCEEEEEECC >Mature Secondary Structure MVWFRKGKGQATRRLALYYTSDIHGSERCFLKFLNAAKFYGVDTLILGGDLTGKVLVPIV CCEEECCCCCCCEEEEEEEECCCCCCHHHHHHHHHHHHHCCCEEEEECCCCCCEEEEEEE EVDGHWEMSFLGRHEVLRSLEEVTEAEKRIRFNGFYPYRCGLEELARLEADRDYADAVFR EECCCEEHHHHHHHHHHHHHHHHHHHHHCEEECCCCCCCCCHHHHHHHHCCCCHHHHHHH RLMRESVARWVRLAEERLRGTGVRCFVMPGNDDEFDIDDALAGSDVVVNPDGAIVEIDGY HHHHHHHHHHHHHHHHHHCCCCEEEEEECCCCCCCCCHHHCCCCCEEECCCCCEEEECCE QLLSLAWANPTPWNSPRELPEEELAARIERLARELDPSLPVIFNLHCPPYDSTLDSAPQL EEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCCCHHH REDLSVVMVGGQPNMIPVGSRAVREAIERYQPVLSLHGHIHESRGAVRIGRTLCINPGSA HCCCEEEEECCCCCEEECCCHHHHHHHHHHHHHHHHHHHHHCCCCCEEECCEEEECCCCC YGEGVLHGALVRLEDDRVASYQLVSG CCCHHHEEEEEEEECCCCEEEEEECC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 8688087 [H]