| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633277
Identifier: 221633277
GI number: 221633277
Start: 1287923
End: 1289239
Strand: Reverse
Name: 221633277
Synonym: trd_1297
Alternate gene names: NA
Gene position: 1289239-1287923 (Counterclockwise)
Preceding gene: 221633278
Following gene: 221633276
Centisome position: 64.37
GC content: 65.0
Gene sequence:
>1317_bases GTGATGCGATCAGGTATCTGGAACCATCTTCGGCGGTATCATGGGCAGCTCGATCCAGGACTGGTGACGATCTGGGTCCT GGGGCTCGTCGTCCGCTTCGCCCTCGCGCCTCTCTCCTTCCATTCCGACCTGTACCAGGTTTACTCGCGTGCTCATCTCG CCATTTCCACTGGTGCGTGGTGGAGCTGGAGTTCGCAGCTGGTCGCGCAGCTCCTGCACGATGCCTGGCTGGCGCTGATT CTCCCCCTGCTGCCAGGGAGCGCCAGCATTTGGTCACCGACCGCAGCTGTCGCCGGTATCGGAGCACAACCGGAGGATAT CGCTCGCTTCCTCGCCTACCCGCTGCTCGGACGTGCGCTGGTCCTGATGAAGCTTCCGTACCTGCTCGCCGATGCGATCG CGGGCTGGCTGATCGGACAACACGTCGTGCCGGCGCGGCGGCGCTGGGCACTGGCGCTTTGGTGGCTCAACCCGATCGTC ATCTACACGAGTGCCGTGTTCGGGCGACACGACAGTATCTGGGTCGTGGCCGTGCTGATCGGGATCGAGTTCGCCCGGCG AGGAGCGCGTTGGACGGGGTTGGCAGTTACGAGCCTGGCCGCAGCTGCCCGATTTTTCCCGGTATTCGTGGTGCCGCTCT ATCTCGTAGCCTTGCGGCGTTCCTGGCGGACTGTCTTCCTCGGGGCAGCAGGTGTCGGCGGGCTCTGGATGGTGGTCGAT CTCGTGCTCCTGCAGCGCACGGGGCAGAGCCCCACGCTGACCTTGCTGGGCGAGTACCCGCATGTTCGTTATCTGATCGC ACTCGCTTTACCCGCCGGTGACGATGTCGCGGTGCCTGTCCTTCCCCTCGTCTACACCATTTTCGTATGCTGGTGGGCGA GTCGTGGGCCACGCGGAGTCGATGCGTACCGCGCGGGGGCAGCAGCGACGCTTTGTGGGATCGTCGCCTTGACCCCGTTT CATCCGCAATATGTCATTTGGTCCCTACCCTTGGCCGTGCCATTCTTGGTCCGTGACCGCACCGGGCCGGTGCTCGCGGT CGCGCAGGCTGCGCTGTTTCTGGCGTGGCTCCCACGGTGGGGCGCTGCGGCGACGACTGGACTCTTGCTGCCGCTCGGTC GCGACGTGATCGAGACGTTACCCGATCCGCAACTGTTGTTGGCTGCGCTCTTGCCGGGATCGGTCTGGCAGCCGTTCGTC CGGGGGGCTTTCGCCGGGGTGACGCTTTGGATCGGCTGGCGTGCGCTCGTCGCTGCACGCCGGAGCTTGCAGGGGACGAC CGAGGATGACCGCGAGTTCGTGAGGATGGAGGCATGA
Upstream 100 bases:
>100_bases CGGCGGTGGCCGGAGCGATCCTGGTCTGGCACCGTGCAGTTACGCTCCTCGGGCTTGCGGGGGTAGGCGTCGTTTCCGCT GTCGCAGGAGAAGCGCGTCC
Downstream 100 bases:
>100_bases GACCGCGTGGCTTGCGCTGGCTGCTCGTCATGGCCTGGTTCGCTCTGTGGTCACTCGGTTGCCGCGTTCCGCAGACGCTG GTCGCGACGGTACCGGAAAG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 438; Mature: 438
Protein sequence:
>438_residues MMRSGIWNHLRRYHGQLDPGLVTIWVLGLVVRFALAPLSFHSDLYQVYSRAHLAISTGAWWSWSSQLVAQLLHDAWLALI LPLLPGSASIWSPTAAVAGIGAQPEDIARFLAYPLLGRALVLMKLPYLLADAIAGWLIGQHVVPARRRWALALWWLNPIV IYTSAVFGRHDSIWVVAVLIGIEFARRGARWTGLAVTSLAAAARFFPVFVVPLYLVALRRSWRTVFLGAAGVGGLWMVVD LVLLQRTGQSPTLTLLGEYPHVRYLIALALPAGDDVAVPVLPLVYTIFVCWWASRGPRGVDAYRAGAAATLCGIVALTPF HPQYVIWSLPLAVPFLVRDRTGPVLAVAQAALFLAWLPRWGAAATTGLLLPLGRDVIETLPDPQLLLAALLPGSVWQPFV RGAFAGVTLWIGWRALVAARRSLQGTTEDDREFVRMEA
Sequences:
>Translated_438_residues MMRSGIWNHLRRYHGQLDPGLVTIWVLGLVVRFALAPLSFHSDLYQVYSRAHLAISTGAWWSWSSQLVAQLLHDAWLALI LPLLPGSASIWSPTAAVAGIGAQPEDIARFLAYPLLGRALVLMKLPYLLADAIAGWLIGQHVVPARRRWALALWWLNPIV IYTSAVFGRHDSIWVVAVLIGIEFARRGARWTGLAVTSLAAAARFFPVFVVPLYLVALRRSWRTVFLGAAGVGGLWMVVD LVLLQRTGQSPTLTLLGEYPHVRYLIALALPAGDDVAVPVLPLVYTIFVCWWASRGPRGVDAYRAGAAATLCGIVALTPF HPQYVIWSLPLAVPFLVRDRTGPVLAVAQAALFLAWLPRWGAAATTGLLLPLGRDVIETLPDPQLLLAALLPGSVWQPFV RGAFAGVTLWIGWRALVAARRSLQGTTEDDREFVRMEA >Mature_438_residues MMRSGIWNHLRRYHGQLDPGLVTIWVLGLVVRFALAPLSFHSDLYQVYSRAHLAISTGAWWSWSSQLVAQLLHDAWLALI LPLLPGSASIWSPTAAVAGIGAQPEDIARFLAYPLLGRALVLMKLPYLLADAIAGWLIGQHVVPARRRWALALWWLNPIV IYTSAVFGRHDSIWVVAVLIGIEFARRGARWTGLAVTSLAAAARFFPVFVVPLYLVALRRSWRTVFLGAAGVGGLWMVVD LVLLQRTGQSPTLTLLGEYPHVRYLIALALPAGDDVAVPVLPLVYTIFVCWWASRGPRGVDAYRAGAAATLCGIVALTPF HPQYVIWSLPLAVPFLVRDRTGPVLAVAQAALFLAWLPRWGAAATTGLLLPLGRDVIETLPDPQLLLAALLPGSVWQPFV RGAFAGVTLWIGWRALVAARRSLQGTTEDDREFVRMEA
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 48047; Mature: 48047
Theoretical pI: Translated: 10.47; Mature: 10.47
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.5 %Cys (Translated Protein) 1.1 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 0.5 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MMRSGIWNHLRRYHGQLDPGLVTIWVLGLVVRFALAPLSFHSDLYQVYSRAHLAISTGAW CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC WSWSSQLVAQLLHDAWLALILPLLPGSASIWSPTAAVAGIGAQPEDIARFLAYPLLGRAL CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH VLMKLPYLLADAIAGWLIGQHVVPARRRWALALWWLNPIVIYTSAVFGRHDSIWVVAVLI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GIEFARRGARWTGLAVTSLAAAARFFPVFVVPLYLVALRRSWRTVFLGAAGVGGLWMVVD HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH LVLLQRTGQSPTLTLLGEYPHVRYLIALALPAGDDVAVPVLPLVYTIFVCWWASRGPRGV HHHHHHCCCCCEEEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC DAYRAGAAATLCGIVALTPFHPQYVIWSLPLAVPFLVRDRTGPVLAVAQAALFLAWLPRW HHHHCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCC GAAATTGLLLPLGRDVIETLPDPQLLLAALLPGSVWQPFVRGAFAGVTLWIGWRALVAAR CCHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSLQGTTEDDREFVRMEA HHCCCCCCCHHHHHHCCC >Mature Secondary Structure MMRSGIWNHLRRYHGQLDPGLVTIWVLGLVVRFALAPLSFHSDLYQVYSRAHLAISTGAW CCCCHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHEEEECCCC WSWSSQLVAQLLHDAWLALILPLLPGSASIWSPTAAVAGIGAQPEDIARFLAYPLLGRAL CCHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHHCCCCCHHHHHHHHHHHHHHHHH VLMKLPYLLADAIAGWLIGQHVVPARRRWALALWWLNPIVIYTSAVFGRHDSIWVVAVLI HHHHHHHHHHHHHHHHHHHCCCCCCHHHHEEHHHHHHHHHHHHHHHHCCCCCHHHHHHHH GIEFARRGARWTGLAVTSLAAAARFFPVFVVPLYLVALRRSWRTVFLGAAGVGGLWMVVD HHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCHHHHHHH LVLLQRTGQSPTLTLLGEYPHVRYLIALALPAGDDVAVPVLPLVYTIFVCWWASRGPRGV HHHHHHCCCCCEEEEEECCCHHEEEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCCCCCC DAYRAGAAATLCGIVALTPFHPQYVIWSLPLAVPFLVRDRTGPVLAVAQAALFLAWLPRW HHHHCCHHHHHHHHHHCCCCCCCCEEEEHHHHHHHHEECCCCCHHHHHHHHHHHHHHCCC GAAATTGLLLPLGRDVIETLPDPQLLLAALLPGSVWQPFVRGAFAGVTLWIGWRALVAAR CCHHHHHHHHHCCHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH RSLQGTTEDDREFVRMEA HHCCCCCCCHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA