Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221633278

Identifier: 221633278

GI number: 221633278

Start: 1289236

End: 1290159

Strand: Reverse

Name: 221633278

Synonym: trd_1298

Alternate gene names: NA

Gene position: 1290159-1289236 (Counterclockwise)

Preceding gene: 221633279

Following gene: 221633277

Centisome position: 64.41

GC content: 65.91

Gene sequence:

>924_bases
ATGACCGAGCGTCCGTCGGCCGGGGTGCGACGCGCCCTCTCTCTCCTTGTAGGTATCGGCCTGCTCACTGCCGTCGTCTG
GCGCTTGGGGTTGACGACCTTCCTGCAGGCCTTGGGCGAACTTCCCTTGGGCGTTCTTCCGCTCGCCGTGGCGATCGGCG
CCGTACCGCCAGTCTGCTATGCCTGGCGCTGGCGCCGGATTCTCGAACTCGCCGACCAGCCGATCTCGCTGGTCGACGCC
TTGCGAGTGACTGTCGCAGCAACGACGGCGAACTATCTCGTTCCTGCGTTCGGGTGGGCTCCGGCGAAGATCGTTCTGGC
GCGACGCTGGCTGCGGATGGGCGTGACCCAGACGGTGCCTTCGGTCGTACTCGAGCAGCTGATCGATCTCACCGTGCTGG
CGGTACTGGCTGGTAGCGGGTTGGTCCTCATCGGCAAGCTGCCCATCCCGCTGCGATCGGGAACGTTCGCCGTCTTCGCG
GCAGTCGTGGTCGCCGTCGTTCTCCTTCTCGGGGTACTCGGCTCGGTCGTTCGCAGAGGTCGTCTGACGGGAATGCGACG
AATGCTTTCGGTGAGTTGGCTGTTCGTCGCCACCATGCTCGGTGATCCACTCGTGTGGAGCGCAACAGCGGGACGCTGGG
CGGCAGAACTTTTTGTGCTCGGTCTCCTCGCCGCACTTTCCGGACTGCAGATCGGTTGGGCAGGCCTGATCGTGCTGCTG
GCCGTGCCTGCGCTCGCCGGCGCACTGGTTCCGATTCCTGGTGGAATCGGTATTCGCGAGGCGAGCGGGGTAGCGATCGC
CGCCTGGCTCGGGATCGATCCGGCGGTGGCCGGAGCGATCCTGGTCTGGCACCGTGCAGTTACGCTCCTCGGGCTTGCGG
GGGTAGGCGTCGTTTCCGCTGTCGCAGGAGAAGCGCGTCCGTGA

Upstream 100 bases:

>100_bases
CTCGAGCACGGTTCGAGGCGGTCGCCTCCGATCGAGCTCGGGCGAGTCGTTTGCGTCCTTTGCTCGACCCCTCGCGACCC
GAGACGGGAGGTGCCCGGCC

Downstream 100 bases:

>100_bases
TGCGATCAGGTATCTGGAACCATCTTCGGCGGTATCATGGGCAGCTCGATCCAGGACTGGTGACGATCTGGGTCCTGGGG
CTCGTCGTCCGCTTCGCCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 307; Mature: 306

Protein sequence:

>307_residues
MTERPSAGVRRALSLLVGIGLLTAVVWRLGLTTFLQALGELPLGVLPLAVAIGAVPPVCYAWRWRRILELADQPISLVDA
LRVTVAATTANYLVPAFGWAPAKIVLARRWLRMGVTQTVPSVVLEQLIDLTVLAVLAGSGLVLIGKLPIPLRSGTFAVFA
AVVVAVVLLLGVLGSVVRRGRLTGMRRMLSVSWLFVATMLGDPLVWSATAGRWAAELFVLGLLAALSGLQIGWAGLIVLL
AVPALAGALVPIPGGIGIREASGVAIAAWLGIDPAVAGAILVWHRAVTLLGLAGVGVVSAVAGEARP

Sequences:

>Translated_307_residues
MTERPSAGVRRALSLLVGIGLLTAVVWRLGLTTFLQALGELPLGVLPLAVAIGAVPPVCYAWRWRRILELADQPISLVDA
LRVTVAATTANYLVPAFGWAPAKIVLARRWLRMGVTQTVPSVVLEQLIDLTVLAVLAGSGLVLIGKLPIPLRSGTFAVFA
AVVVAVVLLLGVLGSVVRRGRLTGMRRMLSVSWLFVATMLGDPLVWSATAGRWAAELFVLGLLAALSGLQIGWAGLIVLL
AVPALAGALVPIPGGIGIREASGVAIAAWLGIDPAVAGAILVWHRAVTLLGLAGVGVVSAVAGEARP
>Mature_306_residues
TERPSAGVRRALSLLVGIGLLTAVVWRLGLTTFLQALGELPLGVLPLAVAIGAVPPVCYAWRWRRILELADQPISLVDAL
RVTVAATTANYLVPAFGWAPAKIVLARRWLRMGVTQTVPSVVLEQLIDLTVLAVLAGSGLVLIGKLPIPLRSGTFAVFAA
VVVAVVLLLGVLGSVVRRGRLTGMRRMLSVSWLFVATMLGDPLVWSATAGRWAAELFVLGLLAALSGLQIGWAGLIVLLA
VPALAGALVPIPGGIGIREASGVAIAAWLGIDPAVAGAILVWHRAVTLLGLAGVGVVSAVAGEARP

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 31806; Mature: 31675

Theoretical pI: Translated: 12.01; Mature: 12.01

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.3 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
2.0 %Cys+Met (Translated Protein)
0.3 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTERPSAGVRRALSLLVGIGLLTAVVWRLGLTTFLQALGELPLGVLPLAVAIGAVPPVCY
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
AWRWRRILELADQPISLVDALRVTVAATTANYLVPAFGWAPAKIVLARRWLRMGVTQTVP
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHH
SVVLEQLIDLTVLAVLAGSGLVLIGKLPIPLRSGTFAVFAAVVVAVVLLLGVLGSVVRRG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTGMRRMLSVSWLFVATMLGDPLVWSATAGRWAAELFVLGLLAALSGLQIGWAGLIVLL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AVPALAGALVPIPGGIGIREASGVAIAAWLGIDPAVAGAILVWHRAVTLLGLAGVGVVSA
HHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAGEARP
HHCCCCC
>Mature Secondary Structure 
TERPSAGVRRALSLLVGIGLLTAVVWRLGLTTFLQALGELPLGVLPLAVAIGAVPPVCY
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHCCCHHHH
AWRWRRILELADQPISLVDALRVTVAATTANYLVPAFGWAPAKIVLARRWLRMGVTQTVP
HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCHHHHHH
SVVLEQLIDLTVLAVLAGSGLVLIGKLPIPLRSGTFAVFAAVVVAVVLLLGVLGSVVRRG
HHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
RLTGMRRMLSVSWLFVATMLGDPLVWSATAGRWAAELFVLGLLAALSGLQIGWAGLIVLL
HHHHHHHHHHHHHHHHHHHHCCCCEEECCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
AVPALAGALVPIPGGIGIREASGVAIAAWLGIDPAVAGAILVWHRAVTLLGLAGVGVVSA
HHHHHHCCCCCCCCCCCCCCCCCCEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
VAGEARP
HHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA