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The map label for this gene is atpD [H]

Identifier: 221633211

GI number: 221633211

Start: 1213937

End: 1215358

Strand: Reverse

Name: atpD [H]

Synonym: trd_1228

Alternate gene names: 221633211

Gene position: 1215358-1213937 (Counterclockwise)

Preceding gene: 221633212

Following gene: 221633210

Centisome position: 60.68

GC content: 63.64

Gene sequence:

>1422_bases
GTGAAGAAGATGGCTACGCAGGTCGCTACTGGCCGGATCGTGCAGATTCAAGGAGTCGTGGTCGACGTCGAGTTCCCGCC
CGGGCAACTGCCCGATATCTACAACGCATTGATCGTCGAGCGGCCCGAGGGTGGCCGGTTGGTGCTGGAAGTTCAGCAGC
ACCTCGGTAACGACTGGGTGCGCGCGGTGGCGATGTCGACGACCGATGGCCTGAAGCGTGGCATGCCCGTGATCGATACC
GGCGAACCGATCAAGGTGCCAGTCGGTCCAGCGACGCTGGGCCGGATTTTCAACGTGGTCGGTGAGCCGATCGACGAGCA
GGGACCCGTGCCGGGGGACGCTCCGCGCTGGCCGATCCATCGTCCGGCGCCCTCTTTCGAGGAGCAATCGACGCAAGTCG
AAGTCTTCGAGACTGGCCTCAAGGTCATCGATCTGGTGGCTCCCTTCACCAAGGGAGGGAAGGTCGGCGTCTTCGGCGGC
GCCGGTGTCGGTAAGACCGTCATCATCATGGAACTGATCCGGAACATCGCCGCTGAGCACGGAGGATACTCGGTCTTCTG
CGGCGTGGGGGAACGCACGCGAGAGGGAACGCAGCTCTGGCGCGAGATGCGCGAGTCAGGCGTCATCGACAAGACGGTGC
TGGTGTTCGGTCAGATGAACGAGCCACCGGGGGCACGCCTGCGGGTCGGGTTGACCGGCCTGACGATGGCCGAGTACTTC
CGCGACGAAGGTCGTGACGTGCTTCTGTTCATCGATAACATCTTCCGGTTCGTGCAGGCTGGCTCCGAAGTGTCGGTGCT
GCTCGGCCGCATGCCCAGTGCAGTGGGATACCAGCCGACGCTCGGGACCGACATGGGACAGCTGCAAGAGCGGATCACCT
CCACCAAGCGTGGTTCGATCACCTCGGTGCAGGCGATCTACGTGCCGGCCGATGATTACACTGACCCGGCCCCAGCGACG
ACCTTCGCGCACCTGGACGCGACGATCGCGCTGGAGCGATCGATCGCCGAGCAAGGACTGTACCCGGCGGTCGATCCGCT
GGCGTCCACCTCGCGTATCCTCGATCCGAATATCGTGGGCGTCGAGCACTACAGGGTCGCGCGCGAAGTTCAGCGGGTGC
TGCAACGGTATCGTGACCTTCAGGACATCATCGCGATCCTCGGCATCGAGGAACTGAGCGAAGAGGACAAGCTGATCGTG
GCGCGCGCCCGGAAGATCCAGCGCTTCCTCTCGCAACCGATGTTCGTGGCGGAAGCGTTCACTGGCCGGCCCGGCCGGTA
CGTCCCGCGGCATGAGACGGTCCGGGGCTTCAAAGAGATTCTCGAGGGGAAGCACGATCACCTGCCAGAGCAGGCCTTCT
ACATGGTAGGGACGATCGATGAGGCGGTAGAGAAAGCCGAGCAGATGGCGCGCGAAGCGTGA

Upstream 100 bases:

>100_bases
AAGGCACGGCAAGCGCAGATCACGCGTGAGGTCAGTGAGATCGCTGCCGGCGCCAATGCACTGGGCGCACTGCAATGATC
GCCGTGAGTCGACGAGTGAG

Downstream 100 bases:

>100_bases
CCGGGGGCGAACGATGGCCGGGAAACTCCGGGTGGAAGTGGTAACCGCCGAACGGGTCGTTTATCAGGTCGATGATGCCG
ATATGGTGATCGCTCCCGGA

Product: ATP synthase F1 subunit beta

Products: NA

Alternate protein names: ATP synthase F1 sector subunit beta; F-ATPase subunit beta [H]

Number of amino acids: Translated: 473; Mature: 473

Protein sequence:

>473_residues
MKKMATQVATGRIVQIQGVVVDVEFPPGQLPDIYNALIVERPEGGRLVLEVQQHLGNDWVRAVAMSTTDGLKRGMPVIDT
GEPIKVPVGPATLGRIFNVVGEPIDEQGPVPGDAPRWPIHRPAPSFEEQSTQVEVFETGLKVIDLVAPFTKGGKVGVFGG
AGVGKTVIIMELIRNIAAEHGGYSVFCGVGERTREGTQLWREMRESGVIDKTVLVFGQMNEPPGARLRVGLTGLTMAEYF
RDEGRDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTDMGQLQERITSTKRGSITSVQAIYVPADDYTDPAPAT
TFAHLDATIALERSIAEQGLYPAVDPLASTSRILDPNIVGVEHYRVAREVQRVLQRYRDLQDIIAILGIEELSEEDKLIV
ARARKIQRFLSQPMFVAEAFTGRPGRYVPRHETVRGFKEILEGKHDHLPEQAFYMVGTIDEAVEKAEQMAREA

Sequences:

>Translated_473_residues
MKKMATQVATGRIVQIQGVVVDVEFPPGQLPDIYNALIVERPEGGRLVLEVQQHLGNDWVRAVAMSTTDGLKRGMPVIDT
GEPIKVPVGPATLGRIFNVVGEPIDEQGPVPGDAPRWPIHRPAPSFEEQSTQVEVFETGLKVIDLVAPFTKGGKVGVFGG
AGVGKTVIIMELIRNIAAEHGGYSVFCGVGERTREGTQLWREMRESGVIDKTVLVFGQMNEPPGARLRVGLTGLTMAEYF
RDEGRDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTDMGQLQERITSTKRGSITSVQAIYVPADDYTDPAPAT
TFAHLDATIALERSIAEQGLYPAVDPLASTSRILDPNIVGVEHYRVAREVQRVLQRYRDLQDIIAILGIEELSEEDKLIV
ARARKIQRFLSQPMFVAEAFTGRPGRYVPRHETVRGFKEILEGKHDHLPEQAFYMVGTIDEAVEKAEQMAREA
>Mature_473_residues
MKKMATQVATGRIVQIQGVVVDVEFPPGQLPDIYNALIVERPEGGRLVLEVQQHLGNDWVRAVAMSTTDGLKRGMPVIDT
GEPIKVPVGPATLGRIFNVVGEPIDEQGPVPGDAPRWPIHRPAPSFEEQSTQVEVFETGLKVIDLVAPFTKGGKVGVFGG
AGVGKTVIIMELIRNIAAEHGGYSVFCGVGERTREGTQLWREMRESGVIDKTVLVFGQMNEPPGARLRVGLTGLTMAEYF
RDEGRDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTDMGQLQERITSTKRGSITSVQAIYVPADDYTDPAPAT
TFAHLDATIALERSIAEQGLYPAVDPLASTSRILDPNIVGVEHYRVAREVQRVLQRYRDLQDIIAILGIEELSEEDKLIV
ARARKIQRFLSQPMFVAEAFTGRPGRYVPRHETVRGFKEILEGKHDHLPEQAFYMVGTIDEAVEKAEQMAREA

Specific function: Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits [H]

COG id: COG0055

COG function: function code C; F0F1-type ATP synthase, beta subunit

Gene ontology:

Cell location: Cell membrane; Peripheral membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ATPase alpha/beta chains family [H]

Homologues:

Organism=Homo sapiens, GI32189394, Length=471, Percent_Identity=70.276008492569, Blast_Score=651, Evalue=0.0,
Organism=Homo sapiens, GI19913424, Length=342, Percent_Identity=27.7777777777778, Blast_Score=127, Evalue=2e-29,
Organism=Homo sapiens, GI19913428, Length=357, Percent_Identity=26.0504201680672, Blast_Score=113, Evalue=5e-25,
Organism=Homo sapiens, GI50345984, Length=307, Percent_Identity=26.7100977198697, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI4757810, Length=307, Percent_Identity=26.7100977198697, Blast_Score=108, Evalue=1e-23,
Organism=Homo sapiens, GI19913426, Length=357, Percent_Identity=25.2100840336134, Blast_Score=107, Evalue=3e-23,
Organism=Escherichia coli, GI1790170, Length=462, Percent_Identity=70.3463203463203, Blast_Score=660, Evalue=0.0,
Organism=Escherichia coli, GI1790172, Length=412, Percent_Identity=26.2135922330097, Blast_Score=127, Evalue=2e-30,
Organism=Escherichia coli, GI1788251, Length=336, Percent_Identity=29.7619047619048, Blast_Score=127, Evalue=2e-30,
Organism=Caenorhabditis elegans, GI25144756, Length=478, Percent_Identity=67.1548117154812, Blast_Score=634, Evalue=0.0,
Organism=Caenorhabditis elegans, GI17565854, Length=349, Percent_Identity=27.7936962750716, Blast_Score=135, Evalue=4e-32,
Organism=Caenorhabditis elegans, GI17510931, Length=419, Percent_Identity=25.5369928400955, Blast_Score=121, Evalue=7e-28,
Organism=Caenorhabditis elegans, GI17570191, Length=415, Percent_Identity=25.0602409638554, Blast_Score=115, Evalue=7e-26,
Organism=Caenorhabditis elegans, GI71988080, Length=374, Percent_Identity=25.1336898395722, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988063, Length=374, Percent_Identity=25.1336898395722, Blast_Score=110, Evalue=1e-24,
Organism=Caenorhabditis elegans, GI71988074, Length=266, Percent_Identity=25.5639097744361, Blast_Score=92, Evalue=5e-19,
Organism=Saccharomyces cerevisiae, GI6322581, Length=460, Percent_Identity=67.6086956521739, Blast_Score=625, Evalue=1e-180,
Organism=Saccharomyces cerevisiae, GI6319603, Length=356, Percent_Identity=27.8089887640449, Blast_Score=116, Evalue=7e-27,
Organism=Saccharomyces cerevisiae, GI6319370, Length=371, Percent_Identity=25.8760107816712, Blast_Score=115, Evalue=2e-26,
Organism=Saccharomyces cerevisiae, GI6320016, Length=249, Percent_Identity=27.3092369477912, Blast_Score=92, Evalue=2e-19,
Organism=Drosophila melanogaster, GI24638766, Length=471, Percent_Identity=68.7898089171974, Blast_Score=638, Evalue=0.0,
Organism=Drosophila melanogaster, GI28574560, Length=476, Percent_Identity=65.3361344537815, Blast_Score=606, Evalue=1e-173,
Organism=Drosophila melanogaster, GI24583988, Length=350, Percent_Identity=27.7142857142857, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24583986, Length=350, Percent_Identity=27.7142857142857, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24583984, Length=350, Percent_Identity=27.7142857142857, Blast_Score=137, Evalue=2e-32,
Organism=Drosophila melanogaster, GI24583992, Length=376, Percent_Identity=28.1914893617021, Blast_Score=135, Evalue=9e-32,
Organism=Drosophila melanogaster, GI20129479, Length=347, Percent_Identity=27.9538904899135, Blast_Score=134, Evalue=1e-31,
Organism=Drosophila melanogaster, GI281361666, Length=360, Percent_Identity=25.2777777777778, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24646341, Length=360, Percent_Identity=25.2777777777778, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI17136796, Length=360, Percent_Identity=25.2777777777778, Blast_Score=112, Evalue=5e-25,
Organism=Drosophila melanogaster, GI24658560, Length=311, Percent_Identity=25.7234726688103, Blast_Score=103, Evalue=3e-22,
Organism=Drosophila melanogaster, GI24638768, Length=93, Percent_Identity=55.9139784946236, Blast_Score=94, Evalue=3e-19,

Paralogues:

None

Copy number: 10836 Molecules/Cell In: Growth Phase, Glucose-minimal MOPS Media. 8,000 Molecules/Cell In: Glucose minimal media [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR020003
- InterPro:   IPR000194
- InterPro:   IPR003593
- InterPro:   IPR005722
- InterPro:   IPR018118
- InterPro:   IPR000793
- InterPro:   IPR004100 [H]

Pfam domain/function: PF00006 ATP-synt_ab; PF00306 ATP-synt_ab_C; PF02874 ATP-synt_ab_N [H]

EC number: =3.6.3.14 [H]

Molecular weight: Translated: 52018; Mature: 52018

Theoretical pI: Translated: 5.16; Mature: 5.16

Prosite motif: PS00152 ATPASE_ALPHA_BETA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.2 %Cys     (Translated Protein)
2.7 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.2 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKKMATQVATGRIVQIQGVVVDVEFPPGQLPDIYNALIVERPEGGRLVLEVQQHLGNDWV
CCHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHEEECCCCCEEEEEEHHHHCCHHH
RAVAMSTTDGLKRGMPVIDTGEPIKVPVGPATLGRIFNVVGEPIDEQGPVPGDAPRWPIH
HHHHHHCHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RPAPSFEEQSTQVEVFETGLKVIDLVAPFTKGGKVGVFGGAGVGKTVIIMELIRNIAAEH
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
GGYSVFCGVGERTREGTQLWREMRESGVIDKTVLVFGQMNEPPGARLRVGLTGLTMAEYF
CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHH
RDEGRDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTDMGQLQERITSTKRGSI
HHCCCEEEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
TSVQAIYVPADDYTDPAPATTFAHLDATIALERSIAEQGLYPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
VEHYRVAREVQRVLQRYRDLQDIIAILGIEELSEEDKLIVARARKIQRFLSQPMFVAEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHH
TGRPGRYVPRHETVRGFKEILEGKHDHLPEQAFYMVGTIDEAVEKAEQMAREA
CCCCCCCCCCHHHHHHHHHHHCCHHHCCCHHHHEEHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MKKMATQVATGRIVQIQGVVVDVEFPPGQLPDIYNALIVERPEGGRLVLEVQQHLGNDWV
CCHHHHHHHCCCEEEEEEEEEEEECCCCCCCHHHHHHEEECCCCCEEEEEEHHHHCCHHH
RAVAMSTTDGLKRGMPVIDTGEPIKVPVGPATLGRIFNVVGEPIDEQGPVPGDAPRWPIH
HHHHHHCHHHHHHCCCEEECCCCEEECCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCC
RPAPSFEEQSTQVEVFETGLKVIDLVAPFTKGGKVGVFGGAGVGKTVIIMELIRNIAAEH
CCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHCC
GGYSVFCGVGERTREGTQLWREMRESGVIDKTVLVFGQMNEPPGARLRVGLTGLTMAEYF
CCEEEEECCCCCCHHHHHHHHHHHHCCCCEEEEEEEECCCCCCCCEEEEEECHHHHHHHH
RDEGRDVLLFIDNIFRFVQAGSEVSVLLGRMPSAVGYQPTLGTDMGQLQERITSTKRGSI
HHCCCEEEEEHHHHHHHHHCCCHHHHHHHCCCCCCCCCCCCCCCHHHHHHHHHHCCCCCC
TSVQAIYVPADDYTDPAPATTFAHLDATIALERSIAEQGLYPAVDPLASTSRILDPNIVG
EEEEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHCCCCCCCC
VEHYRVAREVQRVLQRYRDLQDIIAILGIEELSEEDKLIVARARKIQRFLSQPMFVAEAF
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHCCCCEEHHHH
TGRPGRYVPRHETVRGFKEILEGKHDHLPEQAFYMVGTIDEAVEKAEQMAREA
CCCCCCCCCCHHHHHHHHHHHCCHHHCCCHHHHEEHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA