| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221633067
Identifier: 221633067
GI number: 221633067
Start: 1056265
End: 1057146
Strand: Reverse
Name: 221633067
Synonym: trd_1083
Alternate gene names: NA
Gene position: 1057146-1056265 (Counterclockwise)
Preceding gene: 221633068
Following gene: 221633064
Centisome position: 52.78
GC content: 65.65
Gene sequence:
>882_bases TTGGGTGTGCAGCGCGCCCCTCACTATCTCGCCATCGGCCATGTGACGGTCGACCTCGATCCGGACAACGGTGCACCGCG GCTCGGTGGTACGGCCCTCTATGCAGCGTTGACGGCCGCTCGTTTCGGGATGGACGCTGCCATCCTGACGCGCGGAAACT ACGAGACGTTCGGTGCGGACATCCGAGAGGCGCTGGCGAGGTACTCGCGTGAGGTGGCGATGATCGTGCAAGAGGCGTCT GCGCCGACCGTCTTCACCAATCGCACCGTGGCGGGTCGTCGCGAGCAGGTTGTCCACTCGTGGGCGGGTGCGATCGATTT GAGTGGGCTACCACCGGCCTGGCGCTCTGCACCGATCATTCATCTGGCGCCGGTGGCTCAGGAAATCGACCCTCGGCAAG CGAGCCGGCTCAACCCCGAATTTCTCGGGGCGACGCCACAGGGTTGGATGCGAAAGTGGCCGCGAGGCGGTGGACGAGTC CGATTGATCCCGTTGCGACTCCCCCTGGAAGTGACCACGCGTTTGGACGGACTCGTTCTCAGCACACTCGAGCATACGCT CGCGCGTGACGAGATCGAAGCCGTCGCACAACGCGGCGTGGTGGCGATCACACGAGGACCCGATGGGGCGACCGTGATCG ATCGAGGCCGGACGTACGATATCCCCGCTTTTTCGGTGCCGGTGCGCGACGACGTCGGGGCGGGTGACGTGTTCGCTGCC GTCCTGTTTCTGTTGCGGGCGCAGCACGAAGGAACCTCGTGGGCAGCCAAGATGGCTGCTGCGGCGGCAGCGCTGCGCAT TCGCGGCATCGGACCGGATGCGGTTCCCACCCGCGAAGAGGTCGAGCGCTTTCTGGATCGACTCGGTGAGCGACGGCGGT GA
Upstream 100 bases:
>100_bases CGTCGAGACGCGCAGCAGCGGTGAAGGGGAAGAGCGCCGCGTCACTGTCTACCCGCGTCGCTGAGGCGCGTCCTGCTGTC TTTCGAAAGGATGCCCTCTT
Downstream 100 bases:
>100_bases GTCTGCTGCTCAAGTGGACTGGGCGATCGCGGCGACGAGTGCCCCGGTCAGGCGGACGATCTCCTCAGGGCTGATCTCCA GCATGGTCCGCTCGTCACCG
Product: hypothetical protein
Products: NA
Alternate protein names: PfkB Domain Protein; PfkB Domain-Containing Protein; Carbohydrate Kinase Pfkb Family
Number of amino acids: Translated: 293; Mature: 292
Protein sequence:
>293_residues MGVQRAPHYLAIGHVTVDLDPDNGAPRLGGTALYAALTAARFGMDAAILTRGNYETFGADIREALARYSREVAMIVQEAS APTVFTNRTVAGRREQVVHSWAGAIDLSGLPPAWRSAPIIHLAPVAQEIDPRQASRLNPEFLGATPQGWMRKWPRGGGRV RLIPLRLPLEVTTRLDGLVLSTLEHTLARDEIEAVAQRGVVAITRGPDGATVIDRGRTYDIPAFSVPVRDDVGAGDVFAA VLFLLRAQHEGTSWAAKMAAAAAALRIRGIGPDAVPTREEVERFLDRLGERRR
Sequences:
>Translated_293_residues MGVQRAPHYLAIGHVTVDLDPDNGAPRLGGTALYAALTAARFGMDAAILTRGNYETFGADIREALARYSREVAMIVQEAS APTVFTNRTVAGRREQVVHSWAGAIDLSGLPPAWRSAPIIHLAPVAQEIDPRQASRLNPEFLGATPQGWMRKWPRGGGRV RLIPLRLPLEVTTRLDGLVLSTLEHTLARDEIEAVAQRGVVAITRGPDGATVIDRGRTYDIPAFSVPVRDDVGAGDVFAA VLFLLRAQHEGTSWAAKMAAAAAALRIRGIGPDAVPTREEVERFLDRLGERRR >Mature_292_residues GVQRAPHYLAIGHVTVDLDPDNGAPRLGGTALYAALTAARFGMDAAILTRGNYETFGADIREALARYSREVAMIVQEASA PTVFTNRTVAGRREQVVHSWAGAIDLSGLPPAWRSAPIIHLAPVAQEIDPRQASRLNPEFLGATPQGWMRKWPRGGGRVR LIPLRLPLEVTTRLDGLVLSTLEHTLARDEIEAVAQRGVVAITRGPDGATVIDRGRTYDIPAFSVPVRDDVGAGDVFAAV LFLLRAQHEGTSWAAKMAAAAAALRIRGIGPDAVPTREEVERFLDRLGERRR
Specific function: Unknown
COG id: COG0524
COG function: function code G; Sugar kinases, ribokinase family
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 31741; Mature: 31609
Theoretical pI: Translated: 9.84; Mature: 9.84
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.0 %Cys (Translated Protein) 1.7 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.0 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGVQRAPHYLAIGHVTVDLDPDNGAPRLGGTALYAALTAARFGMDAAILTRGNYETFGAD CCCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH IREALARYSREVAMIVQEASAPTVFTNRTVAGRREQVVHSWAGAIDLSGLPPAWRSAPII HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEECCCCCCCHHCCCEE HLAPVAQEIDPRQASRLNPEFLGATPQGWMRKWPRGGGRVRLIPLRLPLEVTTRLDGLVL EECCHHHHCCCHHHHHCCHHHCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHH STLEHTLARDEIEAVAQRGVVAITRGPDGATVIDRGRTYDIPAFSVPVRDDVGAGDVFAA HHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEECCCCEECCCCCCCCCHHHHHH VLFLLRAQHEGTSWAAKMAAAAAALRIRGIGPDAVPTREEVERFLDRLGERRR HHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCC >Mature Secondary Structure GVQRAPHYLAIGHVTVDLDPDNGAPRLGGTALYAALTAARFGMDAAILTRGNYETFGAD CCCCCCCEEEEEEEEEEECCCCCCCCCCHHHHHHHHHHHHHCCCEEEEECCCCHHHHHH IREALARYSREVAMIVQEASAPTVFTNRTVAGRREQVVHSWAGAIDLSGLPPAWRSAPII HHHHHHHHHHHHHHHHHHCCCCEEEECCCCCCHHHHHHHHHHCCEECCCCCCCHHCCCEE HLAPVAQEIDPRQASRLNPEFLGATPQGWMRKWPRGGGRVRLIPLRLPLEVTTRLDGLVL EECCHHHHCCCHHHHHCCHHHCCCCCHHHHHHCCCCCCEEEEEEEECCHHHHHHHHHHHH STLEHTLARDEIEAVAQRGVVAITRGPDGATVIDRGRTYDIPAFSVPVRDDVGAGDVFAA HHHHHHHHHHHHHHHHHCCEEEEEECCCCCEEEECCCEECCCCEECCCCCCCCCHHHHHH VLFLLRAQHEGTSWAAKMAAAAAALRIRGIGPDAVPTREEVERFLDRLGERRR HHHHHHHCCCCHHHHHHHHHHHHHHEEECCCCCCCCCHHHHHHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA