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The map label for this gene is jag [H]

Identifier: 221633068

GI number: 221633068

Start: 1057183

End: 1057869

Strand: Reverse

Name: jag [H]

Synonym: trd_1084

Alternate gene names: 221633068

Gene position: 1057869-1057183 (Counterclockwise)

Preceding gene: 221633069

Following gene: 221633067

Centisome position: 52.81

GC content: 61.28

Gene sequence:

>687_bases
ATGATGACAGAAAAGCGAGCTGTCGAGATCCAGGCTCGATCAGTCGATGAGGCAGTCCGACTCGCCCTGGAGCAGTTGGG
TCTCCCACGCGAGCGAGTGCATGTCGAGGTCCTGGTGGACAACGTGCCCTATGGTGGTGAGGCTTTGGTGCGGGTCACAC
CGCTCGGGAGCGGCGAAGTACCACGCGGACCGGTGCGACGGCCGGATCCTCAGACGGAAGCGATCGTCAAGCAAGTCGTA
CGCGAGTTGCTTCAGGCTATGGGATTTTCGTGCACCGTTCTCGCTGTGGACAATCCGTCGATCATCGAGCTCGGTCCGGA
TGATCCACCGACGGTGTTCATCGATATCCATGGTCCCCATGCTGGCATGTTGATCGGGAAGCGGGGAGAACATTTAGCTC
AGTTTCAGTACCTGGTGAACGTGCTGGTGAATCGCCGGCTACCGTCGTGGACTCGCGTCATCATCGACGTGGAGGGGTAC
CGGAGTCGGCGAGAAGAATCATTGATCGCGCTCGCCCACCGCGTCGCCCGCCAGGTGGCTCGCACCAGGCAGCCGGTAAC
GCTGGAACCGATGCCAGCCAACGAACGTCGGGTCATCCATGTTGCCCTTCGTGACAATCCGGACGTCGAGACGCGCAGCA
GCGGTGAAGGGGAAGAGCGCCGCGTCACTGTCTACCCGCGTCGCTGA

Upstream 100 bases:

>100_bases
CGATCCCGCATCGCTCGTGCCGCGTCGCTCGCGACCGCGGAACAAGCGGCAGTCTTGACCGCGCCGCTCCTTCACCCGGG
TGTGATGGGGCAGGAGCGAG

Downstream 100 bases:

>100_bases
GGCGCGTCCTGCTGTCTTTCGAAAGGATGCCCTCTTTTGGGTGTGCAGCGCGCCCCTCACTATCTCGCCATCGGCCATGT
GACGGTCGACCTCGATCCGG

Product: protein jag

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 228; Mature: 228

Protein sequence:

>228_residues
MMTEKRAVEIQARSVDEAVRLALEQLGLPRERVHVEVLVDNVPYGGEALVRVTPLGSGEVPRGPVRRPDPQTEAIVKQVV
RELLQAMGFSCTVLAVDNPSIIELGPDDPPTVFIDIHGPHAGMLIGKRGEHLAQFQYLVNVLVNRRLPSWTRVIIDVEGY
RSRREESLIALAHRVARQVARTRQPVTLEPMPANERRVIHVALRDNPDVETRSSGEGEERRVTVYPRR

Sequences:

>Translated_228_residues
MMTEKRAVEIQARSVDEAVRLALEQLGLPRERVHVEVLVDNVPYGGEALVRVTPLGSGEVPRGPVRRPDPQTEAIVKQVV
RELLQAMGFSCTVLAVDNPSIIELGPDDPPTVFIDIHGPHAGMLIGKRGEHLAQFQYLVNVLVNRRLPSWTRVIIDVEGY
RSRREESLIALAHRVARQVARTRQPVTLEPMPANERRVIHVALRDNPDVETRSSGEGEERRVTVYPRR
>Mature_228_residues
MMTEKRAVEIQARSVDEAVRLALEQLGLPRERVHVEVLVDNVPYGGEALVRVTPLGSGEVPRGPVRRPDPQTEAIVKQVV
RELLQAMGFSCTVLAVDNPSIIELGPDDPPTVFIDIHGPHAGMLIGKRGEHLAQFQYLVNVLVNRRLPSWTRVIIDVEGY
RSRREESLIALAHRVARQVARTRQPVTLEPMPANERRVIHVALRDNPDVETRSSGEGEERRVTVYPRR

Specific function: Unknown

COG id: COG1847

COG function: function code R; Predicted RNA-binding protein

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 1 R3H domain [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001374 [H]

Pfam domain/function: PF01424 R3H [H]

EC number: NA

Molecular weight: Translated: 25612; Mature: 25612

Theoretical pI: Translated: 8.50; Mature: 8.50

Prosite motif: PS51061 R3H

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MMTEKRAVEIQARSVDEAVRLALEQLGLPRERVHVEVLVDNVPYGGEALVRVTPLGSGEV
CCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCCEEEEEEECCCCCC
PRGPVRRPDPQTEAIVKQVVRELLQAMGFSCTVLAVDNPSIIELGPDDPPTVFIDIHGPH
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCEEEEEECCCC
AGMLIGKRGEHLAQFQYLVNVLVNRRLPSWTRVIIDVEGYRSRREESLIALAHRVARQVA
CCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
RTRQPVTLEPMPANERRVIHVALRDNPDVETRSSGEGEERRVTVYPRR
HCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCC
>Mature Secondary Structure
MMTEKRAVEIQARSVDEAVRLALEQLGLPRERVHVEVLVDNVPYGGEALVRVTPLGSGEV
CCCCCCEEEEEHHHHHHHHHHHHHHHCCCHHHEEEEEEEECCCCCCCEEEEEEECCCCCC
PRGPVRRPDPQTEAIVKQVVRELLQAMGFSCTVLAVDNPSIIELGPDDPPTVFIDIHGPH
CCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEEECCCCEEEECCCCCCEEEEEECCCC
AGMLIGKRGEHLAQFQYLVNVLVNRRLPSWTRVIIDVEGYRSRREESLIALAHRVARQVA
CCEEECCCCHHHHHHHHHHHHHHHCCCCCEEEEEEECCCHHHHHHHHHHHHHHHHHHHHH
RTRQPVTLEPMPANERRVIHVALRDNPDVETRSSGEGEERRVTVYPRR
HCCCCEEECCCCCCCCEEEEEEECCCCCCCCCCCCCCCCCEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 10427704; 11058132 [H]