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The map label for this gene is xerC [H]

Identifier: 221633040

GI number: 221633040

Start: 1025613

End: 1026608

Strand: Reverse

Name: xerC [H]

Synonym: trd_1055

Alternate gene names: 221633040

Gene position: 1026608-1025613 (Counterclockwise)

Preceding gene: 221633041

Following gene: 221633039

Centisome position: 51.25

GC content: 62.45

Gene sequence:

>996_bases
GTGAGCTTTCGTGTTTTCTCGCGATTCGGACGGAGAGTGGAGGCAGGACCGATGCAGCAGGCGATCGAGGAGTTCTTGAC
TGGCGTGGTGCGCGAGCGAGGGTTGTCGCCGAACACGATCGCAGCGTATCGGAACGATCTCGAGCAGTTCGCGAATTACG
TTGCAGAGCGCTTCGGTCTGAGAGACTGGAGCGAGTTGGTGAGCGAGCATCTCGAGGCCTTTCTCGGCTACCTGCGTGAT
CGCCAGTACGCGGAAACGACGGCAGCGCGAAAGCTGGCGGCGATCAAGTCATTCTGCCATTACCTGGTTCGTGCTGGCCT
GATTGGGGCGAATCCGGCCGATGGCTTGCCGGTCCCTCGGGTCGGTCGCTTCGCGCCGCGCGCCATCGGTCCCAAGGAGG
TCGAGCAGCTGATCGCCGCTGCATCCTCGGATCGCACGCCGGAGGGATTGCGCGATCGTGCGATGCTGATCACGTTGGCG
ACGACCGGCCTGCGGGTGAGTGAACTCACGGCTCTCGACGTGCGAGATGTCGATCTGGACCGTGGAGAACTGATCGTGCG
GCGCCCGAATGGACGGGAACGCGTCGTTCCTCTTGCCCGCGAAGCGATCGAAGCGCTTCGCGACTATCTCGAACGCGGTC
GTCCAGGGTTCACGACTTTGAAAGGCGAACAGGCATTGTTTCTCAACCATCGCGGATCGAGGCTCACTCGGCAGGGTTTC
TGGTTGATCCTCAAGAACTACGCGGCGGCGGCTGGACTCCCGGAGGTAACACCGCATACCCTGCGACACTCGTTCGCCGT
TCGAGCTCTCGTGGATGGGTGGGACCTGCGCGATCTCCAGCGGGTACTCGGGCATGTCAGTCCAGCGACGACGCAGGTGT
ACCGGCAACTCCTCGAGCGCATCGTCCAGTCGGATGGCCGACTCGTGGCCGACCCTGGGTGCTACCATGAAGAGTTGACG
ATGGGGGCTGCTCGAGACCGAGCAGGTGAGCTGTAA

Upstream 100 bases:

>100_bases
TGTGTTTAGAGGAAGGATCACGCATCCTTCCGTTGCGGAGTCGTTCGGTCTGCCGTACGTGCCTCTCGATGAGCTCTTGT
AGAAGGGAGTAGCACGTGCG

Downstream 100 bases:

>100_bases
TTCGACTGGTGATCGCTCGACAGCCCCTCGCCAGAACGAGGGGCTGTGTTTGTCTTCAGGAGGGGACCGTCCATGGACGC
GCGTCACGCTGCCACCGTCC

Product: tyrosine recombinase xerD

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 330

Protein sequence:

>331_residues
MSFRVFSRFGRRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHLEAFLGYLRD
RQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKEVEQLIAAASSDRTPEGLRDRAMLITLA
TTGLRVSELTALDVRDVDLDRGELIVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGF
WLILKNYAAAAGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLERIVQSDGRLVADPGCYHEELT
MGAARDRAGEL

Sequences:

>Translated_331_residues
MSFRVFSRFGRRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHLEAFLGYLRD
RQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKEVEQLIAAASSDRTPEGLRDRAMLITLA
TTGLRVSELTALDVRDVDLDRGELIVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGF
WLILKNYAAAAGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLERIVQSDGRLVADPGCYHEELT
MGAARDRAGEL
>Mature_330_residues
SFRVFSRFGRRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGLRDWSELVSEHLEAFLGYLRDR
QYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPRVGRFAPRAIGPKEVEQLIAAASSDRTPEGLRDRAMLITLAT
TGLRVSELTALDVRDVDLDRGELIVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGFW
LILKNYAAAAGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLERIVQSDGRLVADPGCYHEELTM
GAARDRAGEL

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1789261, Length=275, Percent_Identity=38.5454545454545, Blast_Score=172, Evalue=3e-44,
Organism=Escherichia coli, GI1790244, Length=281, Percent_Identity=33.4519572953737, Blast_Score=148, Evalue=5e-37,
Organism=Escherichia coli, GI1790768, Length=170, Percent_Identity=32.3529411764706, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1790767, Length=164, Percent_Identity=31.0975609756098, Blast_Score=73, Evalue=2e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 37056; Mature: 36925

Theoretical pI: Translated: 9.54; Mature: 9.54

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.8 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
1.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSFRVFSRFGRRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGL
CCCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RDWSELVSEHLEAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
VGRFAPRAIGPKEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLD
CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCCCHHHHHEECCCCCCCC
RGELIVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGF
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCHHHHHHH
WLILKNYAAAAGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLER
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
IVQSDGRLVADPGCYHEELTMGAARDRAGEL
HHHCCCCEEECCCCCHHHHHHHHHHHCCCCC
>Mature Secondary Structure 
SFRVFSRFGRRVEAGPMQQAIEEFLTGVVRERGLSPNTIAAYRNDLEQFANYVAERFGL
CCHHHHHHCCCCCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHCC
RDWSELVSEHLEAFLGYLRDRQYAETTAARKLAAIKSFCHYLVRAGLIGANPADGLPVPR
CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCC
VGRFAPRAIGPKEVEQLIAAASSDRTPEGLRDRAMLITLATTGLRVSELTALDVRDVDLD
CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHEEEEEEECCCCCHHHHHEECCCCCCCC
RGELIVRRPNGRERVVPLAREAIEALRDYLERGRPGFTTLKGEQALFLNHRGSRLTRQGF
CCCEEEECCCCCCHHHHHHHHHHHHHHHHHHCCCCCCEEECCCCEEEEECCCCHHHHHHH
WLILKNYAAAAGLPEVTPHTLRHSFAVRALVDGWDLRDLQRVLGHVSPATTQVYRQLLER
HHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHCCCHHHHHHHHHHHHH
IVQSDGRLVADPGCYHEELTMGAARDRAGEL
HHHCCCCEEECCCCCHHHHHHHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA