| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633037
Identifier: 221633037
GI number: 221633037
Start: 1022275
End: 1023189
Strand: Reverse
Name: 221633037
Synonym: trd_1052
Alternate gene names: NA
Gene position: 1023189-1022275 (Counterclockwise)
Preceding gene: 221633039
Following gene: 221633034
Centisome position: 51.08
GC content: 65.46
Gene sequence:
>915_bases GTGTGGCTGATCGAACTCGCGGTGCTCGTCCTTCTCGGCACCTCGGGGCGGGCGATCGGTGAAGCCGCGGAGCACTCTCG CTGGGTTCGCACGGTCGTTCGGCTCCTGGTAGCTGCCTTGACTCTGTTCTCGGTGGTGCTTGCGGTCGTCGCGACGACTG TTGGGGAGCCATCGCTCGCAATCCGTGCGCTCGGGGCGGGAATTGGCGTCGGACTGGCCTGGTTGGGGGGCTACCGACGC GTCCTCGCTCGGTGGGTACCGATCGATCCTGGCTCGATCCTCGATACCATGGGCCTGGCAGCCCTCCAGGGCGCGATCGG CTTCTTTGGGGGAGCGCTCCTCGTCGCGGAAACATTGCCTCCGTTCGAGGTGACAGCCGAGCAGCTTGCCGGACAGGCAG TCGCCGAGGTGTTCCTGGCGTTCATCTGGATCGGATTCCCGACGCGACGGGGCTGGCGGCAGGCATTGGAACGGCTGGGA CTCCGGGGGACCGATCGTCGTGTGGTCGCTGTCAGCGTCGTGTTCACGCTCGCTCTCTTCGCGGTGTCGGTCGTGACGAG CCTTCTGGCGAGCTTGCTGCAACCAGGCGTCATCGAGCGGATCGAGGAGCGGCTTCTGCCGCTCACGACTGCGTTCGCCT CTCCGGTGGCGGCCCTCGCGCTCGGGTTACTGGCGGGCACCGGGGAAGAGATCCTGTTTCGCGGAGCGATCCAGCCGCGC TATGGCCTTCTCCTGACGACGCTCCTCTACACCGTGCTGCATGTCCAATACGAGCTTTCGCTCGTCAGTCTCGGTGTCTT CGGGTTGGCGATCTTGTTGGGGCTCGAGCGCCGCTGGTTCGGCACGACCGCGTGCATTCTCACCCATGCACTCTACGACG CACTCGCCATTCTTCTGCAGGGAACGCTACGCTGA
Upstream 100 bases:
>100_bases CCGCGTCCCAAACCACTACGGCGTGCCATTGCCCTCCACCGCCTGCACCTCGATGCGAGTCTAGCACGCGCGATGCGAGC GTGAGTCAGGGAGAAGTCCG
Downstream 100 bases:
>100_bases GAGAGATCAACCTGTCGGGAACTGCTGCCACGTTCCATCGCTGTACAGCGCGTAGATGAACCCGCGGTCGCTGGAGATGA GAAGGCCATGCTCGAACGCT
Product: CAAX amino terminal protease family
Products: NA
Alternate protein names: Abortive Infection Protein
Number of amino acids: Translated: 304; Mature: 304
Protein sequence:
>304_residues MWLIELAVLVLLGTSGRAIGEAAEHSRWVRTVVRLLVAALTLFSVVLAVVATTVGEPSLAIRALGAGIGVGLAWLGGYRR VLARWVPIDPGSILDTMGLAALQGAIGFFGGALLVAETLPPFEVTAEQLAGQAVAEVFLAFIWIGFPTRRGWRQALERLG LRGTDRRVVAVSVVFTLALFAVSVVTSLLASLLQPGVIERIEERLLPLTTAFASPVAALALGLLAGTGEEILFRGAIQPR YGLLLTTLLYTVLHVQYELSLVSLGVFGLAILLGLERRWFGTTACILTHALYDALAILLQGTLR
Sequences:
>Translated_304_residues MWLIELAVLVLLGTSGRAIGEAAEHSRWVRTVVRLLVAALTLFSVVLAVVATTVGEPSLAIRALGAGIGVGLAWLGGYRR VLARWVPIDPGSILDTMGLAALQGAIGFFGGALLVAETLPPFEVTAEQLAGQAVAEVFLAFIWIGFPTRRGWRQALERLG LRGTDRRVVAVSVVFTLALFAVSVVTSLLASLLQPGVIERIEERLLPLTTAFASPVAALALGLLAGTGEEILFRGAIQPR YGLLLTTLLYTVLHVQYELSLVSLGVFGLAILLGLERRWFGTTACILTHALYDALAILLQGTLR >Mature_304_residues MWLIELAVLVLLGTSGRAIGEAAEHSRWVRTVVRLLVAALTLFSVVLAVVATTVGEPSLAIRALGAGIGVGLAWLGGYRR VLARWVPIDPGSILDTMGLAALQGAIGFFGGALLVAETLPPFEVTAEQLAGQAVAEVFLAFIWIGFPTRRGWRQALERLG LRGTDRRVVAVSVVFTLALFAVSVVTSLLASLLQPGVIERIEERLLPLTTAFASPVAALALGLLAGTGEEILFRGAIQPR YGLLLTTLLYTVLHVQYELSLVSLGVFGLAILLGLERRWFGTTACILTHALYDALAILLQGTLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32384; Mature: 32384
Theoretical pI: Translated: 9.09; Mature: 9.09
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MWLIELAVLVLLGTSGRAIGEAAEHSRWVRTVVRLLVAALTLFSVVLAVVATTVGEPSLA CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IRALGAGIGVGLAWLGGYRRVLARWVPIDPGSILDTMGLAALQGAIGFFGGALLVAETLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PFEVTAEQLAGQAVAEVFLAFIWIGFPTRRGWRQALERLGLRGTDRRVVAVSVVFTLALF CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH AVSVVTSLLASLLQPGVIERIEERLLPLTTAFASPVAALALGLLAGTGEEILFRGAIQPR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCH YGLLLTTLLYTVLHVQYELSLVSLGVFGLAILLGLERRWFGTTACILTHALYDALAILLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTLR HCCC >Mature Secondary Structure MWLIELAVLVLLGTSGRAIGEAAEHSRWVRTVVRLLVAALTLFSVVLAVVATTVGEPSLA CHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHH IRALGAGIGVGLAWLGGYRRVLARWVPIDPGSILDTMGLAALQGAIGFFGGALLVAETLP HHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC PFEVTAEQLAGQAVAEVFLAFIWIGFPTRRGWRQALERLGLRGTDRRVVAVSVVFTLALF CHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHH AVSVVTSLLASLLQPGVIERIEERLLPLTTAFASPVAALALGLLAGTGEEILFRGAIQPR HHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHEECCCCCH YGLLLTTLLYTVLHVQYELSLVSLGVFGLAILLGLERRWFGTTACILTHALYDALAILLQ HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH GTLR HCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA