| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221633011
Identifier: 221633011
GI number: 221633011
Start: 989999
End: 991777
Strand: Reverse
Name: 221633011
Synonym: trd_1026
Alternate gene names: NA
Gene position: 991777-989999 (Counterclockwise)
Preceding gene: 221633013
Following gene: 221633010
Centisome position: 49.51
GC content: 60.76
Gene sequence:
>1779_bases GTGTTTCCGAGCCGAACACGGGTTCGTCCACGACGGCTCGAGCGCCGTCTTCCCTGGCCGGTGAGCTTGGCGGGACTCCT GATCCCGCTCGTTCTCTCGGTGCTCACGGCTGCCTATGTCTTGTGGTTTCGCGATGATCGAACAGAAGTGGTCGTGGTGG ATCGGGTAACTGGTACGCCGATCGCGGGGGCGGTCATCGAAACTGACGGTGCTGCGTTGCAAACGGATCGTACTGGGCGT GCTCGGCTCTCGGTACGGGCACAGGAGACAATCCGAGTCAGTGCACCGGACCACGATGCGGTTCTCCTGAAGCTGGACCA AGAGCGCGTGCGACGTGTCCGCATCGAGCTGCGGCCTAATGTCGTTACAGGATCGGTGACGCGGAGCGGTGACGGGGCAC CGATCGCGGGTGCCACCGTCCGAGCAGTGAAGGCCGGGGCGACGATCGTGACTGCGGAATCGGATACTCGCGGACAGTAT CTCTTGCGTGGCGTTCCCGAGGGGGCCGAGATCCGCATCGAGCATCCGGACTATGCGCCAATGGTCGTCATGCTCGCGAA CGACCAGACACGCTTGGATGCCGTCTTGCGACCGGATGTGGTGCTCGGCATCGTGCGGGACACAACTGGCCGGCCGGTAC GGGCGCTGGTCGCAGCGGCGCGGGGATGGGTCGAGACGGGCGAGGATGGATCCTTCCGATTGAAAGGGGTTTCTGTTGGT GACCAAGTCTTCGTCAAAGCTCCTGGTTTTCGTGCCGCCGTCTTGACCGTTCCGGAAAACTTTCGACTCGACGTTTCGCT GGAGCCAATCGTGATCCGCGCTATCTACATCAATGCTCTGGTCGCTGCAAAACCGGAGTCGCTCGAGAAACGGCTTCAGC TCGTCGATCGAACCGAGTTGAACGCGGTCGTCATCGATCTCAAGGATAGTACGGGACAGGTTTATTATGACACGCGCGTC GAGCTGGCTCGCGACATCGGTGCGGTGCGTCCGATCCTGGATCCGGCGAAGCTGGTCAAGGACTTGAAGGCGCGCGGAAT CTACACCATCGCTCGGATCGTCGTTTTCGAGGATCCGATCCTGGCTGAGGCTCGGCCGGAATGGGCAATCAAGGACCAGA CGACCGGGCAGGCTTGGCGGACCTGGAACGGCTTGGCATGGGTCAATGCGTATCGCCAGGAAGTGTGGAACTACAACATC GCGCTCGCGGTCGAGGCAGCAGCGATGGGGTTCGACGAGATCCAGCTCGACTACATCCGCTTCCCAACGGACGGTCCCTT GCAGAAGGCCGATTACGGTGTTGCCCACACTGCGGAGAACCGGACGGCAGCGATCGGTGCATTCTTGCGGAGCGCGCACG AAGCGCTCTTGCCGACGCCGGCGTATCTCGCCGCAGACATTTTCGGACTGACGATGTGGGAACTGGGTGACAGTGGTATC GGACAAAATCTGGAAGCGGTGGCCGGGGTGGTCGATTACGTTTGCCCGATGCTCTATCCCTCGCACTTCTGGAGCGGATC GCTCGGATACGAGTTGCCGAATGACCATCCGTACGAAGTGATGCGGTACAGTCTCGAGAATGGGCTGAAGCGCGTTCCAG AGGCTCGTGCCAAGTTCCGACCGTGGTTGCAAGATTTTTCGTACGGACGTGGCAAACCATACGGACCGGATGAGGTACGT GCCCAAATTCGAGCGGTGTACGATGCTGGGCTCAGTTCGTGGATGTTGTGGAACGCAGACAGTGTCTACCAGGAAGCGGC GCTCGAGACGAGTGGATGA
Upstream 100 bases:
>100_bases AAGAGCGATCGCACGGTCACGATCCGCTGCTGGACCTGTGGCATACTGCGCCGCAACAGAAAGCAGCGTGCGGGATGGGG CGGAGAACGGAGCTGGGAGC
Downstream 100 bases:
>100_bases ACGACCGATGGCGTGGTCGTCAGGAGATTCGGTTCATGCGACACTATCGGTTCTGCGTGACCTCATGGTCACTGCGCGTC CCCGGCAATGGTTGAAGAAT
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 592; Mature: 592
Protein sequence:
>592_residues MFPSRTRVRPRRLERRLPWPVSLAGLLIPLVLSVLTAAYVLWFRDDRTEVVVVDRVTGTPIAGAVIETDGAALQTDRTGR ARLSVRAQETIRVSAPDHDAVLLKLDQERVRRVRIELRPNVVTGSVTRSGDGAPIAGATVRAVKAGATIVTAESDTRGQY LLRGVPEGAEIRIEHPDYAPMVVMLANDQTRLDAVLRPDVVLGIVRDTTGRPVRALVAAARGWVETGEDGSFRLKGVSVG DQVFVKAPGFRAAVLTVPENFRLDVSLEPIVIRAIYINALVAAKPESLEKRLQLVDRTELNAVVIDLKDSTGQVYYDTRV ELARDIGAVRPILDPAKLVKDLKARGIYTIARIVVFEDPILAEARPEWAIKDQTTGQAWRTWNGLAWVNAYRQEVWNYNI ALAVEAAAMGFDEIQLDYIRFPTDGPLQKADYGVAHTAENRTAAIGAFLRSAHEALLPTPAYLAADIFGLTMWELGDSGI GQNLEAVAGVVDYVCPMLYPSHFWSGSLGYELPNDHPYEVMRYSLENGLKRVPEARAKFRPWLQDFSYGRGKPYGPDEVR AQIRAVYDAGLSSWMLWNADSVYQEAALETSG
Sequences:
>Translated_592_residues MFPSRTRVRPRRLERRLPWPVSLAGLLIPLVLSVLTAAYVLWFRDDRTEVVVVDRVTGTPIAGAVIETDGAALQTDRTGR ARLSVRAQETIRVSAPDHDAVLLKLDQERVRRVRIELRPNVVTGSVTRSGDGAPIAGATVRAVKAGATIVTAESDTRGQY LLRGVPEGAEIRIEHPDYAPMVVMLANDQTRLDAVLRPDVVLGIVRDTTGRPVRALVAAARGWVETGEDGSFRLKGVSVG DQVFVKAPGFRAAVLTVPENFRLDVSLEPIVIRAIYINALVAAKPESLEKRLQLVDRTELNAVVIDLKDSTGQVYYDTRV ELARDIGAVRPILDPAKLVKDLKARGIYTIARIVVFEDPILAEARPEWAIKDQTTGQAWRTWNGLAWVNAYRQEVWNYNI ALAVEAAAMGFDEIQLDYIRFPTDGPLQKADYGVAHTAENRTAAIGAFLRSAHEALLPTPAYLAADIFGLTMWELGDSGI GQNLEAVAGVVDYVCPMLYPSHFWSGSLGYELPNDHPYEVMRYSLENGLKRVPEARAKFRPWLQDFSYGRGKPYGPDEVR AQIRAVYDAGLSSWMLWNADSVYQEAALETSG >Mature_592_residues MFPSRTRVRPRRLERRLPWPVSLAGLLIPLVLSVLTAAYVLWFRDDRTEVVVVDRVTGTPIAGAVIETDGAALQTDRTGR ARLSVRAQETIRVSAPDHDAVLLKLDQERVRRVRIELRPNVVTGSVTRSGDGAPIAGATVRAVKAGATIVTAESDTRGQY LLRGVPEGAEIRIEHPDYAPMVVMLANDQTRLDAVLRPDVVLGIVRDTTGRPVRALVAAARGWVETGEDGSFRLKGVSVG DQVFVKAPGFRAAVLTVPENFRLDVSLEPIVIRAIYINALVAAKPESLEKRLQLVDRTELNAVVIDLKDSTGQVYYDTRV ELARDIGAVRPILDPAKLVKDLKARGIYTIARIVVFEDPILAEARPEWAIKDQTTGQAWRTWNGLAWVNAYRQEVWNYNI ALAVEAAAMGFDEIQLDYIRFPTDGPLQKADYGVAHTAENRTAAIGAFLRSAHEALLPTPAYLAADIFGLTMWELGDSGI GQNLEAVAGVVDYVCPMLYPSHFWSGSLGYELPNDHPYEVMRYSLENGLKRVPEARAKFRPWLQDFSYGRGKPYGPDEVR AQIRAVYDAGLSSWMLWNADSVYQEAALETSG
Specific function: Unknown
COG id: COG1306
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 65403; Mature: 65403
Theoretical pI: Translated: 6.31; Mature: 6.31
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 1.5 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.4 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MFPSRTRVRPRRLERRLPWPVSLAGLLIPLVLSVLTAAYVLWFRDDRTEVVVVDRVTGTP CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCC IAGAVIETDGAALQTDRTGRARLSVRAQETIRVSAPDHDAVLLKLDQERVRRVRIELRPN CCCEEEECCCCEEECCCCCCEEEEEEEEEEEEEECCCCCEEEEEECHHHHHEEEEEECCC VVTGSVTRSGDGAPIAGATVRAVKAGATIVTAESDTRGQYLLRGVPEGAEIRIEHPDYAP EEECCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCEEEECCCCCCEEEEECCCCCC MVVMLANDQTRLDAVLRPDVVLGIVRDTTGRPVRALVAAARGWVETGEDGSFRLKGVSVG EEEEEECCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC DQVFVKAPGFRAAVLTVPENFRLDVSLEPIVIRAIYINALVAAKPESLEKRLQLVDRTEL CEEEEECCCCEEEEEECCCCCEEEEECCCEEEEEEEHHHHHHCCCHHHHHHHHHHCCCCC NAVVIDLKDSTGQVYYDTRVELARDIGAVRPILDPAKLVKDLKARGIYTIARIVVFEDPI CEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEECCCC LAEARPEWAIKDQTTGQAWRTWNGLAWVNAYRQEVWNYNIALAVEAAAMGFDEIQLDYIR CCCCCCCCEECCCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHHCCCCCEEEEEEE FPTDGPLQKADYGVAHTAENRTAAIGAFLRSAHEALLPTPAYLAADIFGLTMWELGDSGI CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC GQNLEAVAGVVDYVCPMLYPSHFWSGSLGYELPNDHPYEVMRYSLENGLKRVPEARAKFR CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH PWLQDFSYGRGKPYGPDEVRAQIRAVYDAGLSSWMLWNADSVYQEAALETSG HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCC >Mature Secondary Structure MFPSRTRVRPRRLERRLPWPVSLAGLLIPLVLSVLTAAYVLWFRDDRTEVVVVDRVTGTP CCCCCCCCCHHHHHHCCCCCHHHHHHHHHHHHHHHHHHEEEEEECCCCEEEEEEECCCCC IAGAVIETDGAALQTDRTGRARLSVRAQETIRVSAPDHDAVLLKLDQERVRRVRIELRPN CCCEEEECCCCEEECCCCCCEEEEEEEEEEEEEECCCCCEEEEEECHHHHHEEEEEECCC VVTGSVTRSGDGAPIAGATVRAVKAGATIVTAESDTRGQYLLRGVPEGAEIRIEHPDYAP EEECCEEECCCCCCCCCCCEEEEECCEEEEEECCCCCCCEEEECCCCCCEEEEECCCCCC MVVMLANDQTRLDAVLRPDVVLGIVRDTTGRPVRALVAAARGWVETGEDGSFRLKGVSVG EEEEEECCCHHHHHHCCCCEEEEEEECCCCCHHHHHHHHHHCCCCCCCCCCEEEEEECCC DQVFVKAPGFRAAVLTVPENFRLDVSLEPIVIRAIYINALVAAKPESLEKRLQLVDRTEL CEEEEECCCCEEEEEECCCCCEEEEECCCEEEEEEEHHHHHHCCCHHHHHHHHHHCCCCC NAVVIDLKDSTGQVYYDTRVELARDIGAVRPILDPAKLVKDLKARGIYTIARIVVFEDPI CEEEEEEECCCCCEEEEHHHHHHHHHHHHCCCCCHHHHHHHHHHCCCEEEEEEEEECCCC LAEARPEWAIKDQTTGQAWRTWNGLAWVNAYRQEVWNYNIALAVEAAAMGFDEIQLDYIR CCCCCCCCEECCCCCCCHHHCCCCCHHHHHHHHHHCCCEEEEEEEHHHCCCCCEEEEEEE FPTDGPLQKADYGVAHTAENRTAAIGAFLRSAHEALLPTPAYLAADIFGLTMWELGDSGI CCCCCCCCCCCCCCEECCCCCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHCCCCCC GQNLEAVAGVVDYVCPMLYPSHFWSGSLGYELPNDHPYEVMRYSLENGLKRVPEARAKFR CCCHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHCHHHHHHHH PWLQDFSYGRGKPYGPDEVRAQIRAVYDAGLSSWMLWNADSVYQEAALETSG HHHHHHCCCCCCCCCHHHHHHHHHHHHHCCCCCEEEECCHHHHHHHHCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA