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The map label for this gene is hofB [C]

Identifier: 221633002

GI number: 221633002

Start: 972798

End: 974249

Strand: Reverse

Name: hofB [C]

Synonym: trd_1011

Alternate gene names: 221633002

Gene position: 974249-972798 (Counterclockwise)

Preceding gene: 221633003

Following gene: 221633001

Centisome position: 48.64

GC content: 58.61

Gene sequence:

>1452_bases
ATGTCGCTTCTCCGGCGATTGAGTACGGCAGGTGACACTGGTCTGCTCGCAACCGAAGTGCCGGCCGATCGCCCAGACGA
GCCAGAGCAGTCACGCGGACCGATGGGAACCGGCCAACTCGCGCAGACGCTCAAACGACCGAGTCTGCGAGCGAGTGCTG
CGGCTTCATCCAACGAGAATGCCTTTCAACAGCTCAAGGGGCGAGTGCAACAGCGGGTCATCGCTGAACTCGATCCGCGC
ATGGATCTCAGCGACCCTGATCGTGTGCGCCGTACCCTCGAGGAAACGTTTCTCTCGGTGCTGGAATCGGAGGGAATCGT
CCTCGGTCGCACGGAACGGCACCGGCTGTTCGAAGCGATCGTTGCAGAAATTCTCGGTTATGGCCCGATCGAACCCTTGC
TGAAGGACAACACCGTGACCGAGATCATGGTGAACGGTCCGAAGCAGGTGTGGGTCGAGCGGAACGGCAAATTGGAGAAA
ACGGCGATCGAGTTCGATGATGACGACCATGTCATGCGCATCATCGACCGGATCGTGTCACCGCTCGGACGGCGCATCGA
CGAAAGCTCGCCGATGGTGGATGCTCGCCTCCCTGATGGCTCCCGAATCAATGCGGTCATACCGCCGATATCGTTGGTCG
GCCCCTGCTTGACCATTCGGAAATTCAGCCGTGATCCGCTGACAGTCGATGATTTGATTCGCTTCGGGACCATGACACCC
GAGATCACGCAGTTCTTGAAGGCATGCGTCAATGCGCGCTTGAACATCGTCGTTTCGGGCGGAACCGGGTCGGGCAAGAC
GACGCTCCTCAATGTTCTTTCGTCGTTCATTCCTAGTGATGAGCGCATCGTGACCATCGAGAATGCTGCCGAACTTCAGC
TCCGTCAGGAGCATGTCGTCACGTTGGAGTCGCGGCCGCCCAACATCGAAGGGAAGGGTGAAGTCACGATTCGTGACCTG
GTGATCAATGCCTTGCGGATGCGACCCGACCGGATCGTGGTCGGCGAGTGCCGTGGTGGCGAAGCGCTCGACATGCTGCA
AGCGATGAATACGGGTCACGATGGTTCGATGACCACAGTCCACTCGAACAGTCCTCGCGACACACTCCACCGTTTAGAGA
CGATGGTGCTGATGGCCGGGATGGACTTGCCAGTGCGGGCCATACGTGAACAGATCGCATCCGCACTCGATTTGATCATC
CACATGGCGCGTCTCAAGGACGGGTCGCGGAAGATCGTCGCGATCACCGAGGTCCAGGGAATGGAAGGGGACGTCATCGT
CCTGCAAGACATCTTCGTCTTCGAGCAGACAGGCTTCGAAAACGGGAAGGTACTCGGGCGCATCAGGCCGACCGGCGTGC
GACCCAAGTTCGTGGAAAAGTTCGAGGTTGCCAACATTTACTTGCCTCCACAGATCTTCGGTGTGAACTACCAGCGACCT
TTCGGGAGGTAG

Upstream 100 bases:

>100_bases
ACGAGTCGCGAGAAGCCGTGCTGCACGCAAGGGTTCGCAAACGTCGCCTGCCTTTCTTGAGCGTCTCTCACCGATGGACC
AACGGGAGGAGATGAGTGCC

Downstream 100 bases:

>100_bases
TCGGTGTTCGGGGATCCGCTCCTCCTCATCGCTGTTTCCCTCGCTGGAGCCGCTGTGATGCTCGTTCTGGCGGGTTTGCA
CGCGCGGTCTCGCGGTCACT

Product: CpaF

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 483; Mature: 482

Protein sequence:

>483_residues
MSLLRRLSTAGDTGLLATEVPADRPDEPEQSRGPMGTGQLAQTLKRPSLRASAAASSNENAFQQLKGRVQQRVIAELDPR
MDLSDPDRVRRTLEETFLSVLESEGIVLGRTERHRLFEAIVAEILGYGPIEPLLKDNTVTEIMVNGPKQVWVERNGKLEK
TAIEFDDDDHVMRIIDRIVSPLGRRIDESSPMVDARLPDGSRINAVIPPISLVGPCLTIRKFSRDPLTVDDLIRFGTMTP
EITQFLKACVNARLNIVVSGGTGSGKTTLLNVLSSFIPSDERIVTIENAAELQLRQEHVVTLESRPPNIEGKGEVTIRDL
VINALRMRPDRIVVGECRGGEALDMLQAMNTGHDGSMTTVHSNSPRDTLHRLETMVLMAGMDLPVRAIREQIASALDLII
HMARLKDGSRKIVAITEVQGMEGDVIVLQDIFVFEQTGFENGKVLGRIRPTGVRPKFVEKFEVANIYLPPQIFGVNYQRP
FGR

Sequences:

>Translated_483_residues
MSLLRRLSTAGDTGLLATEVPADRPDEPEQSRGPMGTGQLAQTLKRPSLRASAAASSNENAFQQLKGRVQQRVIAELDPR
MDLSDPDRVRRTLEETFLSVLESEGIVLGRTERHRLFEAIVAEILGYGPIEPLLKDNTVTEIMVNGPKQVWVERNGKLEK
TAIEFDDDDHVMRIIDRIVSPLGRRIDESSPMVDARLPDGSRINAVIPPISLVGPCLTIRKFSRDPLTVDDLIRFGTMTP
EITQFLKACVNARLNIVVSGGTGSGKTTLLNVLSSFIPSDERIVTIENAAELQLRQEHVVTLESRPPNIEGKGEVTIRDL
VINALRMRPDRIVVGECRGGEALDMLQAMNTGHDGSMTTVHSNSPRDTLHRLETMVLMAGMDLPVRAIREQIASALDLII
HMARLKDGSRKIVAITEVQGMEGDVIVLQDIFVFEQTGFENGKVLGRIRPTGVRPKFVEKFEVANIYLPPQIFGVNYQRP
FGR
>Mature_482_residues
SLLRRLSTAGDTGLLATEVPADRPDEPEQSRGPMGTGQLAQTLKRPSLRASAAASSNENAFQQLKGRVQQRVIAELDPRM
DLSDPDRVRRTLEETFLSVLESEGIVLGRTERHRLFEAIVAEILGYGPIEPLLKDNTVTEIMVNGPKQVWVERNGKLEKT
AIEFDDDDHVMRIIDRIVSPLGRRIDESSPMVDARLPDGSRINAVIPPISLVGPCLTIRKFSRDPLTVDDLIRFGTMTPE
ITQFLKACVNARLNIVVSGGTGSGKTTLLNVLSSFIPSDERIVTIENAAELQLRQEHVVTLESRPPNIEGKGEVTIRDLV
INALRMRPDRIVVGECRGGEALDMLQAMNTGHDGSMTTVHSNSPRDTLHRLETMVLMAGMDLPVRAIREQIASALDLIIH
MARLKDGSRKIVAITEVQGMEGDVIVLQDIFVFEQTGFENGKVLGRIRPTGVRPKFVEKFEVANIYLPPQIFGVNYQRPF
GR

Specific function: Unknown

COG id: COG4962

COG function: function code U; Flp pilus assembly protein, ATPase CpaF

Gene ontology:

Cell location: Cytoplasm (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the GSP E family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR022399
- InterPro:   IPR001482 [H]

Pfam domain/function: PF00437 GSPII_E [H]

EC number: NA

Molecular weight: Translated: 53511; Mature: 53380

Theoretical pI: Translated: 6.00; Mature: 6.00

Prosite motif: PS00227 TUBULIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
3.9 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
3.1 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSLLRRLSTAGDTGLLATEVPADRPDEPEQSRGPMGTGQLAQTLKRPSLRASAAASSNEN
CCHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCHH
AFQQLKGRVQQRVIAELDPRMDLSDPDRVRRTLEETFLSVLESEGIVLGRTERHRLFEAI
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
VAEILGYGPIEPLLKDNTVTEIMVNGPKQVWVERNGKLEKTAIEFDDDDHVMRIIDRIVS
HHHHHCCCCCCHHHCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
PLGRRIDESSPMVDARLPDGSRINAVIPPISLVGPCLTIRKFSRDPLTVDDLIRFGTMTP
HHHHHCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCH
EITQFLKACVNARLNIVVSGGTGSGKTTLLNVLSSFIPSDERIVTIENAAELQLRQEHVV
HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCEE
TLESRPPNIEGKGEVTIRDLVINALRMRPDRIVVGECRGGEALDMLQAMNTGHDGSMTTV
EEECCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEE
HSNSPRDTLHRLETMVLMAGMDLPVRAIREQIASALDLIIHMARLKDGSRKIVAITEVQG
ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
MEGDVIVLQDIFVFEQTGFENGKVLGRIRPTGVRPKFVEKFEVANIYLPPQIFGVNYQRP
CCCCEEEEEEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHEEEEEEECCEEECCCCCCC
FGR
CCC
>Mature Secondary Structure 
SLLRRLSTAGDTGLLATEVPADRPDEPEQSRGPMGTGQLAQTLKRPSLRASAAASSNEN
CHHHHHHCCCCCCEEEECCCCCCCCCCHHHCCCCCHHHHHHHHHCCCCHHHHCCCCCHH
AFQQLKGRVQQRVIAELDPRMDLSDPDRVRRTLEETFLSVLESEGIVLGRTERHRLFEAI
HHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEECHHHHHHHHHH
VAEILGYGPIEPLLKDNTVTEIMVNGPKQVWVERNGKLEKTAIEFDDDDHVMRIIDRIVS
HHHHHCCCCCCHHHCCCCEEEEEECCCCEEEEECCCCEEEEEEECCCCHHHHHHHHHHHH
PLGRRIDESSPMVDARLPDGSRINAVIPPISLVGPCLTIRKFSRDPLTVDDLIRFGTMTP
HHHHHCCCCCCEEEEECCCCCCCEEECCCHHHHHHHHHHHHCCCCCCCHHHHHHHCCCCH
EITQFLKACVNARLNIVVSGGTGSGKTTLLNVLSSFIPSDERIVTIENAAELQLRQEHVV
HHHHHHHHHHCCEEEEEEECCCCCCHHHHHHHHHHHCCCCCEEEEECCCHHHHCCCCCEE
TLESRPPNIEGKGEVTIRDLVINALRMRPDRIVVGECRGGEALDMLQAMNTGHDGSMTTV
EEECCCCCCCCCCCEEHHHHHHHHHHCCCCEEEEEECCCCHHHHHHHHHCCCCCCCEEEE
HSNSPRDTLHRLETMVLMAGMDLPVRAIREQIASALDLIIHMARLKDGSRKIVAITEVQG
ECCCCHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEECC
MEGDVIVLQDIFVFEQTGFENGKVLGRIRPTGVRPKFVEKFEVANIYLPPQIFGVNYQRP
CCCCEEEEEEEEHHHHCCCCCCCEEEEECCCCCCHHHHHHHEEEEEEECCEEECCCCCCC
FGR
CCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12218036; 9634230 [H]