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The map label for this gene is potC [H]

Identifier: 221632876

GI number: 221632876

Start: 856532

End: 857383

Strand: Reverse

Name: potC [H]

Synonym: trd_0875

Alternate gene names: 221632876

Gene position: 857383-856532 (Counterclockwise)

Preceding gene: 221632877

Following gene: 221632872

Centisome position: 42.8

GC content: 58.45

Gene sequence:

>852_bases
ATGGCCGAAGCAGCGACTCCGCTCGAACGGCTCGAGATAGCAGTACAGCCAAGGCGAAGCCGGCGCGCGATACCGTGGGC
GCGTATTGTCCTGGGGATATTCAGTGCACTGGTGCTCTTATACCTCGTCGCGCCGGTTCTCATCGTCATTCCGATGTCGT
TCAGCGCGGCCAAGTATCTGTCCTTTCCACCCCCGGGGCTCTCCCTCCAGTGGTACGAGAACTTCTTTGCGCGTTCCGAC
TGGACATCGGCGACCATTCAAAGCATTCGGGTCGCCTTCATGGTCATGGTGCTCTCGACCGTACTAGGAGTGGCGGCTTC
CCTCGCACTCGTACGTGCGTCGTTTCCTGGTAAGGAGATCGTCAACCTTATCATCGTCTCGCCGCTCGTGGTACCAGCTA
TCATCGTCGCGATCGCGATTTATGGTTTGTATGTGCAACTTCGTTTGGTTCAGACGTTTTGGGGGCTCGTCCTCGCGCAT
ACGGTGCTGGCGATTCCCTACGTTATCGTGAACGTGTCCGCGACCTTACGGGGTTTCGATATCCGCTTGGAGCAGGCGGC
TCAGAGCCTCGGAGCGAATGGGTGGCAAACGTTTCGGCACGTGACGTTGCCGCTGATCAGCCCAGGTATCTTCGCCGGCG
CTGTATTCGCTTTCATCGCTTCGTTCGACGAACTCATCGTTGCTCTCTTCATCGCAGGAGCCCGGGGCCGCACGTTGCCG
ATGCGCATGTTCGAAGGACTGCGCATGGAGATCGATCCGACGATCGCTGCAGTATCCTCGATGCTGATCACCTTTTCCGT
TCTGGTCTTGGCATCGGCGGAATTGGTGCGGCGGCGTAGCCAGGTCGAGTAG

Upstream 100 bases:

>100_bases
CAGCAGCTCTCGCGACTGTTCTTCTCGTGGTGACGCTGATCATCTTTGCCATTTACAATCGGTTACTCGGACTCGATAAA
ATGTTCGGGGGTGGCGTCTG

Downstream 100 bases:

>100_bases
CCCGTGGCCGTAGGGAAGTCGCCTCCGGTACAAAACAGTTCCGTACACGTGTCGCAGGCGGCGACCAAGCGTTGGCTGCG
CCGCGGTCTCGTACTGCTCG

Product: putative ABC transporter permease

Products: Phosphate; putrescine [Cytoplasm]; ADP; spermidine [Cytoplasm] [C]

Alternate protein names: NA

Number of amino acids: Translated: 283; Mature: 282

Protein sequence:

>283_residues
MAEAATPLERLEIAVQPRRSRRAIPWARIVLGIFSALVLLYLVAPVLIVIPMSFSAAKYLSFPPPGLSLQWYENFFARSD
WTSATIQSIRVAFMVMVLSTVLGVAASLALVRASFPGKEIVNLIIVSPLVVPAIIVAIAIYGLYVQLRLVQTFWGLVLAH
TVLAIPYVIVNVSATLRGFDIRLEQAAQSLGANGWQTFRHVTLPLISPGIFAGAVFAFIASFDELIVALFIAGARGRTLP
MRMFEGLRMEIDPTIAAVSSMLITFSVLVLASAELVRRRSQVE

Sequences:

>Translated_283_residues
MAEAATPLERLEIAVQPRRSRRAIPWARIVLGIFSALVLLYLVAPVLIVIPMSFSAAKYLSFPPPGLSLQWYENFFARSD
WTSATIQSIRVAFMVMVLSTVLGVAASLALVRASFPGKEIVNLIIVSPLVVPAIIVAIAIYGLYVQLRLVQTFWGLVLAH
TVLAIPYVIVNVSATLRGFDIRLEQAAQSLGANGWQTFRHVTLPLISPGIFAGAVFAFIASFDELIVALFIAGARGRTLP
MRMFEGLRMEIDPTIAAVSSMLITFSVLVLASAELVRRRSQVE
>Mature_282_residues
AEAATPLERLEIAVQPRRSRRAIPWARIVLGIFSALVLLYLVAPVLIVIPMSFSAAKYLSFPPPGLSLQWYENFFARSDW
TSATIQSIRVAFMVMVLSTVLGVAASLALVRASFPGKEIVNLIIVSPLVVPAIIVAIAIYGLYVQLRLVQTFWGLVLAHT
VLAIPYVIVNVSATLRGFDIRLEQAAQSLGANGWQTFRHVTLPLISPGIFAGAVFAFIASFDELIVALFIAGARGRTLPM
RMFEGLRMEIDPTIAAVSSMLITFSVLVLASAELVRRRSQVE

Specific function: Required for the activity of the bacterial periplasmic transport system of putrescine and spermidine [H]

COG id: COG1177

COG function: function code E; ABC-type spermidine/putrescine transport system, permease component II

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787368, Length=230, Percent_Identity=28.695652173913, Blast_Score=122, Evalue=3e-29,
Organism=Escherichia coli, GI1787714, Length=224, Percent_Identity=36.1607142857143, Blast_Score=114, Evalue=5e-27,
Organism=Escherichia coli, GI1787081, Length=249, Percent_Identity=32.5301204819277, Blast_Score=106, Evalue=2e-24,
Organism=Escherichia coli, GI1788764, Length=154, Percent_Identity=28.5714285714286, Blast_Score=75, Evalue=4e-15,
Organism=Escherichia coli, GI1786980, Length=182, Percent_Identity=33.5164835164835, Blast_Score=74, Evalue=8e-15,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 30924; Mature: 30793

Theoretical pI: Translated: 10.70; Mature: 10.70

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.8 %Met     (Translated Protein)
2.8 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure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HHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
>Mature Secondary Structure 
AEAATPLERLEIAVQPRRSRRAIPWARIVLGIFSALVLLYLVAPVLIVIPMSFSAAKYL
CCCCCHHHHHHHHCCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHC
SFPPPGLSLQWYENFFARSDWTSATIQSIRVAFMVMVLSTVLGVAASLALVRASFPGKEI
CCCCCCCCHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHH
VNLIIVSPLVVPAIIVAIAIYGLYVQLRLVQTFWGLVLAHTVLAIPYVIVNVSATLRGFD
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
IRLEQAAQSLGANGWQTFRHVTLPLISPGIFAGAVFAFIASFDELIVALFIAGARGRTLP
HHHHHHHHHHCCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCH
MRMFEGLRMEIDPTIAAVSSMLITFSVLVLASAELVRRRSQVE
HHHHCCCCEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: Putrescine [Periplasm]; H2O; ATP; spermidine [Periplasm] [C]

Specific reaction: ATP + putrescine [Periplasm] + H2O = ADP + phosphate + putrescine [Cytoplasm] ATP + spermidine [Periplasm] + H2O = ADP + phosphate + spermidine [Cytoplasm] [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]