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The map label for this gene is yggS [C]

Identifier: 221632825

GI number: 221632825

Start: 797548

End: 798240

Strand: Reverse

Name: yggS [C]

Synonym: trd_0819

Alternate gene names: 221632825

Gene position: 798240-797548 (Counterclockwise)

Preceding gene: 221632826

Following gene: 221632824

Centisome position: 39.85

GC content: 58.3

Gene sequence:

>693_bases
ATGCAAGAGTACGAGCGACTGCGCGAGCATTTGGCTCGTGTGCGATGCCGTATCGAGCGGGCGGCTGAACGAGCAGGACG
CGATCCACAGAGCGTGCAGATCGTCGCTGTGACGAAAGGGATCGATCGGGAAAAAGTGCAGGCAGCGTACGAACTCGGCC
TACGCCTTTTCGGGGAAAACCGCGTTCAGGAGGCACAGCGAAAGTTCGGTGAAAACCCGCTTCCACCTGATGCGGAGCTT
CATCTCATTGGCTATCTGCAAACCAACAAGGTTCGACATGCCGTCAAGCTCTTCGCTCTGATCCATTCCGTTGACCGTGC
AGCTCTCATCGAGGAACTGCACGAACGAGCTGCGCGCGTTGGCCGCCGCCTTCCTATCTTGATTCAGGTGAATATCGCCG
GCGAGGAACAGAAACACGGTTGTCGACCGGCTGAGGCTGCTGAACTTCTCGCTTTGGGGCTCACGAAACCACATTTGGAC
GTTCGCGGCCTGATGACGATCGCACCGCTCGTAGCAGAAAGCGAACTTGTCCGGCCAGTCTTCCGCGCACTGCGGGAGCT
GCGCGATCAGCTTCAAGAACGTTTCCAACACCCTCTCCCGGAGCTTTCCATGGGCATGTCGAACGATTTCGACATCGCTG
TCGAGGAAGGAGCGACGCTCGTCCGGATCGGTCGCGCGCTGTTCGGAGACTAA

Upstream 100 bases:

>100_bases
TGCCGGAGAGTGGTTCTCGTATCGCGCGAACGGCTCACGTGCTGGTGCCCAAGCTGCCGTGATCGCGCTCCCTTGAGCGG
CACGGAATCTGGAGAAGGCC

Downstream 100 bases:

>100_bases
AACGTGGAAGTGTTCTGTTTCGGCAGCGGCAGTGAGGGGAACGCTTTTCTCGTCCGCACCCAGCGGACAAGCATCCTCAT
CGATGCAGGATTGGCGGCGA

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 230; Mature: 230

Protein sequence:

>230_residues
MQEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQRKFGENPLPPDAEL
HLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLD
VRGLMTIAPLVAESELVRPVFRALRELRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD

Sequences:

>Translated_230_residues
MQEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQRKFGENPLPPDAEL
HLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLD
VRGLMTIAPLVAESELVRPVFRALRELRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD
>Mature_230_residues
MQEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGENRVQEAQRKFGENPLPPDAEL
HLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARVGRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLD
VRGLMTIAPLVAESELVRPVFRALRELRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD

Specific function: Unknown

COG id: COG0325

COG function: function code R; Predicted enzyme with a TIM-barrel fold

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0001 family [H]

Homologues:

Organism=Homo sapiens, GI6005842, Length=228, Percent_Identity=38.1578947368421, Blast_Score=124, Evalue=8e-29,
Organism=Escherichia coli, GI1789321, Length=226, Percent_Identity=39.8230088495575, Blast_Score=125, Evalue=3e-30,
Organism=Caenorhabditis elegans, GI17533025, Length=220, Percent_Identity=31.3636363636364, Blast_Score=84, Evalue=5e-17,
Organism=Saccharomyces cerevisiae, GI6319435, Length=239, Percent_Identity=32.2175732217573, Blast_Score=93, Evalue=3e-20,
Organism=Drosophila melanogaster, GI45550861, Length=223, Percent_Identity=36.7713004484305, Blast_Score=103, Evalue=1e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001608
- InterPro:   IPR011078 [H]

Pfam domain/function: PF01168 Ala_racemase_N [H]

EC number: NA

Molecular weight: Translated: 26003; Mature: 26003

Theoretical pI: Translated: 7.74; Mature: 7.74

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
1.7 %Met     (Translated Protein)
2.6 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
1.7 %Met     (Mature Protein)
2.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MQEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGEN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCH
RVQEAQRKFGENPLPPDAELHLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARV
HHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLDVRGLMTIAPLVAESELVRPV
CCCCCEEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FRALRELRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHCC
>Mature Secondary Structure
MQEYERLREHLARVRCRIERAAERAGRDPQSVQIVAVTKGIDREKVQAAYELGLRLFGEN
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCEEEEEEECCCCHHHHHHHHHHHHHHHCCH
RVQEAQRKFGENPLPPDAELHLIGYLQTNKVRHAVKLFALIHSVDRAALIEELHERAARV
HHHHHHHHHCCCCCCCCCCEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
GRRLPILIQVNIAGEEQKHGCRPAEAAELLALGLTKPHLDVRGLMTIAPLVAESELVRPV
CCCCCEEEEEEECCCHHHCCCCHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHHHHH
FRALRELRDQLQERFQHPLPELSMGMSNDFDIAVEEGATLVRIGRALFGD
HHHHHHHHHHHHHHHHCCCCHHHCCCCCCCCEEECCCCHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]