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The map label for this gene is ylmD [H]

Identifier: 221632826

GI number: 221632826

Start: 798265

End: 799035

Strand: Reverse

Name: ylmD [H]

Synonym: trd_0820

Alternate gene names: 221632826

Gene position: 799035-798265 (Counterclockwise)

Preceding gene: 221632827

Following gene: 221632825

Centisome position: 39.89

GC content: 62.26

Gene sequence:

>771_bases
ATGATCGTGCGTCCCTTCCGCTTCGCGCGCTTGTCCGCACTCGGTATTCCGCACGGTGTGACCAAGCGGGACCCCTCTCT
GCCCGCTTTTGGATCAGTGAGTGGGAATGTCACTATCTCGATCGTGCTCGCGAATCGGCGCGCCTGGTGGGAACGCCTCG
GCTTACCGCTCGAGCATACCGTCTTTGCCCGCCAAGTGCATGGCACGCGGGTTACCGTCGTCACGGCGTCAGAGCGCGGT
CGCGGAGCCCTCGAACCGGGCACGGGAATCCCGGAGAGCGATGCACTCGTGACGACGGAACGGAACCTGCCGCTCGCCAT
GATCTGCGCTGATTGCGTGCCGGTCTTGTTGTACGCACCCGACGTCCCAGCTATCGGCGTCGTTCACGCCGGTTGGCGTG
GTACCGTGGCCGGAATTACGCGACAAGCAGTCCACATCTTGTGCACACTGTTTTCCGCTCGCCCTGAGCGTTTGTGGGCT
TTTCTCGGGCCATCGATCGGCCCATGCTGTTACGAAGTGGGAGAAGAAGTGATCACAGCCTGGCTCGCCACCGAGCCATC
GAACGGTCATCAGGCTGTTCTCTCGCGAAATGGCCGGGCGATTTTCGATCTTTGGCGAGCCAACGAACTGCTCCTCGTTG
AAGGAGGAGTCGATCCGGCGCACATCGAGCGCGCCGGGATTTGCACGCGTTGTCATGCCGGAGAGTGGTTCTCGTATCGC
GCGAACGGCTCACGTGCTGGTGCCCAAGCTGCCGTGATCGCGCTCCCTTGA

Upstream 100 bases:

>100_bases
CCATCCGCGTGTCGGACCCCGCCGAACTCGAACGAGCAGCCTCCCAAGCTGTTGTCGATACGAGTCCTTGGCTGATTCAC
GTGATGTTGGGTACAGAGGC

Downstream 100 bases:

>100_bases
GCGGCACGGAATCTGGAGAAGGCCATGCAAGAGTACGAGCGACTGCGCGAGCATTTGGCTCGTGTGCGATGCCGTATCGA
GCGGGCGGCTGAACGAGCAG

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 256; Mature: 256

Protein sequence:

>256_residues
MIVRPFRFARLSALGIPHGVTKRDPSLPAFGSVSGNVTISIVLANRRAWWERLGLPLEHTVFARQVHGTRVTVVTASERG
RGALEPGTGIPESDALVTTERNLPLAMICADCVPVLLYAPDVPAIGVVHAGWRGTVAGITRQAVHILCTLFSARPERLWA
FLGPSIGPCCYEVGEEVITAWLATEPSNGHQAVLSRNGRAIFDLWRANELLLVEGGVDPAHIERAGICTRCHAGEWFSYR
ANGSRAGAQAAVIALP

Sequences:

>Translated_256_residues
MIVRPFRFARLSALGIPHGVTKRDPSLPAFGSVSGNVTISIVLANRRAWWERLGLPLEHTVFARQVHGTRVTVVTASERG
RGALEPGTGIPESDALVTTERNLPLAMICADCVPVLLYAPDVPAIGVVHAGWRGTVAGITRQAVHILCTLFSARPERLWA
FLGPSIGPCCYEVGEEVITAWLATEPSNGHQAVLSRNGRAIFDLWRANELLLVEGGVDPAHIERAGICTRCHAGEWFSYR
ANGSRAGAQAAVIALP
>Mature_256_residues
MIVRPFRFARLSALGIPHGVTKRDPSLPAFGSVSGNVTISIVLANRRAWWERLGLPLEHTVFARQVHGTRVTVVTASERG
RGALEPGTGIPESDALVTTERNLPLAMICADCVPVLLYAPDVPAIGVVHAGWRGTVAGITRQAVHILCTLFSARPERLWA
FLGPSIGPCCYEVGEEVITAWLATEPSNGHQAVLSRNGRAIFDLWRANELLLVEGGVDPAHIERAGICTRCHAGEWFSYR
ANGSRAGAQAAVIALP

Specific function: Unknown

COG id: COG1496

COG function: function code S; Uncharacterized conserved protein

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the UPF0124 family [H]

Homologues:

Organism=Homo sapiens, GI190194374, Length=174, Percent_Identity=31.0344827586207, Blast_Score=99, Evalue=3e-21,
Organism=Homo sapiens, GI190194372, Length=174, Percent_Identity=31.0344827586207, Blast_Score=99, Evalue=3e-21,
Organism=Escherichia coli, GI1788945, Length=214, Percent_Identity=30.3738317757009, Blast_Score=77, Evalue=8e-16,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003730
- InterPro:   IPR011324 [H]

Pfam domain/function: PF02578 Cu-oxidase_4 [H]

EC number: NA

Molecular weight: Translated: 27522; Mature: 27522

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.7 %Cys     (Translated Protein)
0.8 %Met     (Translated Protein)
3.5 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MIVRPFRFARLSALGIPHGVTKRDPSLPAFGSVSGNVTISIVLANRRAWWERLGLPLEHT
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHCCCHHHH
VFARQVHGTRVTVVTASERGRGALEPGTGIPESDALVTTERNLPLAMICADCVPVLLYAP
HHHEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHEEEEECC
DVPAIGVVHAGWRGTVAGITRQAVHILCTLFSARPERLWAFLGPSIGPCCYEVGEEVITA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
WLATEPSNGHQAVLSRNGRAIFDLWRANELLLVEGGVDPAHIERAGICTRCHAGEWFSYR
HHCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHCCCEEECCCCCCEEEE
ANGSRAGAQAAVIALP
CCCCCCCCCEEEEECC
>Mature Secondary Structure
MIVRPFRFARLSALGIPHGVTKRDPSLPAFGSVSGNVTISIVLANRRAWWERLGLPLEHT
CCCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCEEEEEEEECCHHHHHHHCCCHHHH
VFARQVHGTRVTVVTASERGRGALEPGTGIPESDALVTTERNLPLAMICADCVPVLLYAP
HHHEEECCCEEEEEEECCCCCCCCCCCCCCCCCCEEEEECCCCCHHHHHHHHHEEEEECC
DVPAIGVVHAGWRGTVAGITRQAVHILCTLFSARPERLWAFLGPSIGPCCYEVGEEVITA
CCCEEEEEECCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHH
WLATEPSNGHQAVLSRNGRAIFDLWRANELLLVEGGVDPAHIERAGICTRCHAGEWFSYR
HHCCCCCCCCEEEECCCCCEEEEEECCCEEEEEECCCCHHHHHHCCCEEECCCCCCEEEE
ANGSRAGAQAAVIALP
CCCCCCCCCEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]