| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632781
Identifier: 221632781
GI number: 221632781
Start: 762471
End: 762863
Strand: Reverse
Name: 221632781
Synonym: trd_0774
Alternate gene names: NA
Gene position: 762863-762471 (Counterclockwise)
Preceding gene: 221632782
Following gene: 221632780
Centisome position: 38.09
GC content: 62.85
Gene sequence:
>393_bases TTGATCCCGTTTCTCGTCGAGGAGGTCGTGACGATGAGCGAGCGTCCCGACCAGCGCAAGCGCCGCGGACCGCGGCTCAA GCATTTGCCTGTCCGCACCTGCGTCGCTTGCCGCGCTCGAGATCTCAAGCGAACATTTGTCCGTATCGTGCGGACCCCGG AAGGGACGCTCGCCATCGATCCGACCGGAAAGCGGAGCGGGCGCGGCGCGTATCTTTGCCGACGGTTTAGTTGTTGGGAG CGAGCAGCAAATACCGACGTCCTCGAACGTGCTCTCCGCATACCCGTCCCACAGGAGTTTCGTGACGAACTCCTTCGTTG GGCCGATCTGCACATCCGCCGTGACGACCCGCCCGCACCTGAGACAACACCCGAACAGGAGGACCAGCTATGA
Upstream 100 bases:
>100_bases GCGTCGTCAATGTCTATTACGATCGCGAACTTCGTGCTCGGTACGATTTCGAAACCGGTCGTGAGCTACCATTGACCGAT GACGAAACGGCGAATGTCCG
Downstream 100 bases:
>100_bases GCACCAAAGCGAAAAAGCACGCACCGGTACAAAACAATCGGTCGCCGATGACTGCACAGCGGAGCTCGCCTGCTGCGAGT GTCGCCCGCGGCCCTGTCGA
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL
Sequences:
>Translated_130_residues MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL >Mature_130_residues MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAIDPTGKRSGRGAYLCRRFSCWE RAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAPETTPEQEDQL
Specific function: Unknown
COG id: COG2740
COG function: function code K; Predicted nucleic-acid-binding protein implicated in transcription termination
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 15201; Mature: 15201
Theoretical pI: Translated: 10.05; Mature: 10.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
3.1 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 4.6 %Cys+Met (Translated Protein) 3.1 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 4.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAID CCHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC PTGKRSGRGAYLCRRFSCWERAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAP CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCC ETTPEQEDQL CCCCCCCCCC >Mature Secondary Structure MIPFLVEEVVTMSERPDQRKRRGPRLKHLPVRTCVACRARDLKRTFVRIVRTPEGTLAID CCHHHHHHHHHHHCCCCHHHHCCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCEEEC PTGKRSGRGAYLCRRFSCWERAANTDVLERALRIPVPQEFRDELLRWADLHIRRDDPPAP CCCCCCCCHHHHHHHHHHHHHHCCHHHHHHHHCCCCCHHHHHHHHHHHHHHEECCCCCCC ETTPEQEDQL CCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA