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The map label for this gene is rbfA

Identifier: 221632779

GI number: 221632779

Start: 760185

End: 760574

Strand: Reverse

Name: rbfA

Synonym: trd_0772

Alternate gene names: 221632779

Gene position: 760574-760185 (Counterclockwise)

Preceding gene: 221632780

Following gene: 221632778

Centisome position: 37.97

GC content: 60.0

Gene sequence:

>390_bases
ATGCCCAGCTATCGACAAGCTCGCCTGGCCGAGTTCTTGCGAGACGAGATCGCTGCCATCATTCAACGCGAGCTGCGTGA
CCCACGGCTCGGCTTCGTGAGCGTGACCCGCGTCGAGATGAGTCCCGACCTTCGCCATGCGAAGGTGTTCGTCTCCATCT
ATGGGAGCCATGAGGAGCAAGAGGCTGCACTGGAAGCCCTGCAAGGAGCCGCCGGCTTCATTCGCCGCCTTATCGCACCC
CATCTCCATACTCGGCATATTCCCGAACTTCATTTCAAACTCGATCGATCGCTCGAGCACGCCGAGCAGGTCGCCCGCTT
GCTGAGGCAGATCCAGCAGGAACGGCAAAGGGATGAGTCTGCAGTCGAAAGCACGCCGGAGAGTGAGTGA

Upstream 100 bases:

>100_bases
CTGCGCGTCGGGGACCAAATCGAGTTCTATCACGTCGAACGAGTCCCGCGCGGGCAGTGAACGTCTGCCCGCGCGGCTCG
CCGCGCGAGGGGAGCCAACG

Downstream 100 bases:

>100_bases
AACACCTCCCACGCAAACGAGCGACGTCCGGATGGCCTGGGAGCTCCTCGCTGGTTCGCGCACGTTGCTCATCGCCACGC
ATGCCAATCCGGACGCTGAC

Product: ribosome-binding factor A

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 129; Mature: 128

Protein sequence:

>129_residues
MPSYRQARLAEFLRDEIAAIIQRELRDPRLGFVSVTRVEMSPDLRHAKVFVSIYGSHEEQEAALEALQGAAGFIRRLIAP
HLHTRHIPELHFKLDRSLEHAEQVARLLRQIQQERQRDESAVESTPESE

Sequences:

>Translated_129_residues
MPSYRQARLAEFLRDEIAAIIQRELRDPRLGFVSVTRVEMSPDLRHAKVFVSIYGSHEEQEAALEALQGAAGFIRRLIAP
HLHTRHIPELHFKLDRSLEHAEQVARLLRQIQQERQRDESAVESTPESE
>Mature_128_residues
PSYRQARLAEFLRDEIAAIIQRELRDPRLGFVSVTRVEMSPDLRHAKVFVSIYGSHEEQEAALEALQGAAGFIRRLIAPH
LHTRHIPELHFKLDRSLEHAEQVARLLRQIQQERQRDESAVESTPESE

Specific function: Associates with free 30S ribosomal subunits (but not with 30S subunits that are part of 70S ribosomes or polysomes). Essential for efficient processing of 16S rRNA. May interact with the 5'-terminal helix region of 16S rRNA

COG id: COG0858

COG function: function code J; Ribosome-binding factor A

Gene ontology:

Cell location: Cytoplasm (Potential)

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the rbfA family

Homologues:

Organism=Escherichia coli, GI1789558, Length=110, Percent_Identity=41.8181818181818, Blast_Score=86, Evalue=7e-19,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): RBFA_THERP (B9KZ59)

Other databases:

- EMBL:   CP001275
- RefSeq:   YP_002522001.1
- ProteinModelPortal:   B9KZ59
- GeneID:   7355445
- GenomeReviews:   CP001275_GR
- KEGG:   tro:trd_0772
- OMA:   INAKVFI
- ProtClustDB:   CLSK2807684
- GO:   GO:0005737
- HAMAP:   MF_00003
- InterPro:   IPR015946
- InterPro:   IPR000238
- Gene3D:   G3DSA:3.30.300.20
- ProDom:   PD007327
- TIGRFAMs:   TIGR00082

Pfam domain/function: PF02033 RBFA; SSF89919 Rib_bd_factA

EC number: NA

Molecular weight: Translated: 14929; Mature: 14798

Theoretical pI: Translated: 6.64; Mature: 6.64

Prosite motif: PS01319 RBFA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.6 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
0.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPSYRQARLAEFLRDEIAAIIQRELRDPRLGFVSVTRVEMSPDLRHAKVFVSIYGSHEEQ
CCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHHHHCCCCHH
EAALEALQGAAGFIRRLIAPHLHTRHIPELHFKLDRSLEHAEQVARLLRQIQQERQRDES
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVESTPESE
HHHCCCCCC
>Mature Secondary Structure 
PSYRQARLAEFLRDEIAAIIQRELRDPRLGFVSVTRVEMSPDLRHAKVFVSIYGSHEEQ
CCHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHEEEEECCCCCHHHHHHHHHHHCCCCHH
EAALEALQGAAGFIRRLIAPHLHTRHIPELHFKLDRSLEHAEQVARLLRQIQQERQRDES
HHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
AVESTPESE
HHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA