| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632711
Identifier: 221632711
GI number: 221632711
Start: 687217
End: 687462
Strand: Reverse
Name: 221632711
Synonym: trd_0699
Alternate gene names: NA
Gene position: 687462-687217 (Counterclockwise)
Preceding gene: 221632712
Following gene: 221632710
Centisome position: 34.32
GC content: 56.91
Gene sequence:
>246_bases ATGCCGATCTACGAATACGAATGCACGACCTGTGGCCATCGCTTCGAGGTCAAGCAGCGCTTCTCTGACGAACCAGTCGC CAGTTGCCCGAGTTGCGGCAACGCTGTCCGTCGTTTGCTCTATCCCGCCGGGATCATCTTCAAGGGATCCGGCTTTTACA TCACGGACTACAAGCGTTCCGGAAGCTCTAACGGGAAGAGCGAAAGCAGCTCGGAGACCGTCTCGTCCAGCTCCAAGGAT GACTGA
Upstream 100 bases:
>100_bases GAGTGAAACTCTCCCACTAGACCTTGCTCAAGGATGCGACGGCGATTACAATTTTCCGGGCGGGACGCGATCGACTCTTG CCACGCAGGAGGGGTGGTCG
Downstream 100 bases:
>100_bases CTTTCTCATCAGAGCGGTGAGCGGGCGACCGATCCTGGTCGCCCGCTTCTTTTCTGATCTGATCCGTGCAGGCTTCAGGT ATGCTCTGGTGGGACGCGAC
Product: putative regulatory protein, FmdB family
Products: NA
Alternate protein names: FmdB Family Regulatory Protein; Type I Antifreeze Protein; Regulatory Protein Fmdb Family; Serine Rich Protein; FmdB Transcriptional Regulator; Regulatory Protein; Conserved Serine Rich Protein; FmdB Family Transcriptional Regulator
Number of amino acids: Translated: 81; Mature: 80
Protein sequence:
>81_residues MPIYEYECTTCGHRFEVKQRFSDEPVASCPSCGNAVRRLLYPAGIIFKGSGFYITDYKRSGSSNGKSESSSETVSSSSKD D
Sequences:
>Translated_81_residues MPIYEYECTTCGHRFEVKQRFSDEPVASCPSCGNAVRRLLYPAGIIFKGSGFYITDYKRSGSSNGKSESSSETVSSSSKD D >Mature_80_residues PIYEYECTTCGHRFEVKQRFSDEPVASCPSCGNAVRRLLYPAGIIFKGSGFYITDYKRSGSSNGKSESSSETVSSSSKDD
Specific function: Unknown
COG id: COG2331
COG function: function code S; Uncharacterized protein conserved in bacteria
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 8904; Mature: 8773
Theoretical pI: Translated: 7.13; Mature: 7.13
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
4.9 %Cys (Translated Protein) 1.2 %Met (Translated Protein) 6.2 %Cys+Met (Translated Protein) 5.0 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 5.0 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPIYEYECTTCGHRFEVKQRFSDEPVASCPSCGNAVRRLLYPAGIIFKGSGFYITDYKRS CCCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEECCCCC GSSNGKSESSSETVSSSSKDD CCCCCCCCCCCCCCCCCCCCC >Mature Secondary Structure PIYEYECTTCGHRFEVKQRFSDEPVASCPSCGNAVRRLLYPAGIIFKGSGFYITDYKRS CCCCCCCCCCCCCHHHHHHCCCCCCCCCCCHHHHHHHHHCCCCEEECCCCEEEECCCCC GSSNGKSESSSETVSSSSKDD CCCCCCCCCCCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA