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The map label for this gene is ybbR [H]

Identifier: 221632699

GI number: 221632699

Start: 676760

End: 678004

Strand: Reverse

Name: ybbR [H]

Synonym: trd_0687

Alternate gene names: 221632699

Gene position: 678004-676760 (Counterclockwise)

Preceding gene: 221632700

Following gene: 221632687

Centisome position: 33.85

GC content: 60.64

Gene sequence:

>1245_bases
GTGCGACCATCGCTGCGTCGGGAGACTGTCGCTCGCCTCGCGCTCGCTTTCGTTCTCGCCTTCGGGCTCTGGGCTTGGGT
CGAAGCGACGAACGATCCGGAGACGCAACGGACGATCTCGAACGTGCCTGTCTTGCCCCGTGGCCTTTCTCCTCAACTCG
TCGTCACCAGCGAATTGCCGACCGTAACCGTCCGGATCCAGGGTGCGCAGAGTCGTGTCCAATCGTTCGAAAGCGGCGCC
ATCCAAGCGTGGATCGACCTGCGTGATGTCGACAGTCCAGGAACATACATCCGGCCAGTGCGTGTTCAGCTTCCCAGCCG
ATTACGCCTCCGCGAGGTTGTTCCCCAGGAAGTAACGGTTCAGATCGACCGTCTCGTGGAACGTGGCGACGTGCCGGTCC
AGGTCATCTTTACTGGCCAAATTCCACCCAATCTCCAGGTGCTCTCCACAACTCTTGACCCAGCGACGGTGATCGTTCGG
GGTCCGCAACAGCGGGTAGAGAACATTGCCCGCGTGACGGCTCCGCTCCAACTAGCCGGTCGGACGGAAAGTTTCCAGGA
GAGTGTTACCCTCATCCCAGTCGATGCCAACGGTGTGACTGTGCCGGGTATCACCGTCGAGCCATCGACGGCGGTCGTCT
CGGTGCAACTGCGCGTGCGCGGCCAAGTGCGAAGGGTTGTCCCGACCATCGTCGGTGCAGACAAACTCGCCCCCGGGTAC
GAACTCGCTGGTCCTCCGACAGTGTTTCCCTCTGACGAGGTCGTCATCGAAGGCCCCGAGTCAGCACTCGCTGCCATTCC
ATATCTCACGACCACGCCGATCGATGTGTCAGGATGGAGCGAGTCTCGTATCCTGTGGGACGTTCCTATCGATACGTCGA
GGCTTCCTTCGGGGGTTACAGTGGATCCGAAGACGGTCAACGTCTCCGTCCAGATTCGGCGAGCTGAGGAAACCCGATCA
CTTCAAGGTCTCCCGATCACTGTGGTGAACGCGCGTCCGGGGACCACCGTCGAGCTTACACCGAGCACAGTCGATCTCGA
AGTGAGTGGACCGAGTACCGTGCTCGAGCAGCTGAAGCCGGGTGATATCCTGGTCATCGTCGATGTCGAGAATGCCGAGC
AGGGAATTTATCAGCTTCCCGTTCGAGTGACGCTTCCGCCCGAGGTTCGGTACGAGCGTCTCTCCCCCCAAGTGGTGCAA
GTGACCATCCGGTCAGTGCAACCAACGCCGTCTCCCACACCGTGA

Upstream 100 bases:

>100_bases
GCGAGCGGTACAGACGCTCCCGATGCGAAACGAAGAAGGGAACCGACCGGTGCAACGACGCGCGAGGATACTCCGGCCTC
TCCGTCACGCATGGGCTAGC

Downstream 100 bases:

>100_bases
GCGACCTGCAACGAGAGAAAATGAGTCCCTGCCGTCTTTTGCTTGGGAAAAGGACTTTTCGTGAAGAAATTAGGTTCGGG
GCTCGGTCGAGCGCGTGCTG

Product: YbbR-like protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 414; Mature: 414

Protein sequence:

>414_residues
MRPSLRRETVARLALAFVLAFGLWAWVEATNDPETQRTISNVPVLPRGLSPQLVVTSELPTVTVRIQGAQSRVQSFESGA
IQAWIDLRDVDSPGTYIRPVRVQLPSRLRLREVVPQEVTVQIDRLVERGDVPVQVIFTGQIPPNLQVLSTTLDPATVIVR
GPQQRVENIARVTAPLQLAGRTESFQESVTLIPVDANGVTVPGITVEPSTAVVSVQLRVRGQVRRVVPTIVGADKLAPGY
ELAGPPTVFPSDEVVIEGPESALAAIPYLTTTPIDVSGWSESRILWDVPIDTSRLPSGVTVDPKTVNVSVQIRRAEETRS
LQGLPITVVNARPGTTVELTPSTVDLEVSGPSTVLEQLKPGDILVIVDVENAEQGIYQLPVRVTLPPEVRYERLSPQVVQ
VTIRSVQPTPSPTP

Sequences:

>Translated_414_residues
MRPSLRRETVARLALAFVLAFGLWAWVEATNDPETQRTISNVPVLPRGLSPQLVVTSELPTVTVRIQGAQSRVQSFESGA
IQAWIDLRDVDSPGTYIRPVRVQLPSRLRLREVVPQEVTVQIDRLVERGDVPVQVIFTGQIPPNLQVLSTTLDPATVIVR
GPQQRVENIARVTAPLQLAGRTESFQESVTLIPVDANGVTVPGITVEPSTAVVSVQLRVRGQVRRVVPTIVGADKLAPGY
ELAGPPTVFPSDEVVIEGPESALAAIPYLTTTPIDVSGWSESRILWDVPIDTSRLPSGVTVDPKTVNVSVQIRRAEETRS
LQGLPITVVNARPGTTVELTPSTVDLEVSGPSTVLEQLKPGDILVIVDVENAEQGIYQLPVRVTLPPEVRYERLSPQVVQ
VTIRSVQPTPSPTP
>Mature_414_residues
MRPSLRRETVARLALAFVLAFGLWAWVEATNDPETQRTISNVPVLPRGLSPQLVVTSELPTVTVRIQGAQSRVQSFESGA
IQAWIDLRDVDSPGTYIRPVRVQLPSRLRLREVVPQEVTVQIDRLVERGDVPVQVIFTGQIPPNLQVLSTTLDPATVIVR
GPQQRVENIARVTAPLQLAGRTESFQESVTLIPVDANGVTVPGITVEPSTAVVSVQLRVRGQVRRVVPTIVGADKLAPGY
ELAGPPTVFPSDEVVIEGPESALAAIPYLTTTPIDVSGWSESRILWDVPIDTSRLPSGVTVDPKTVNVSVQIRRAEETRS
LQGLPITVVNARPGTTVELTPSTVDLEVSGPSTVLEQLKPGDILVIVDVENAEQGIYQLPVRVTLPPEVRYERLSPQVVQ
VTIRSVQPTPSPTP

Specific function: Unknown

COG id: COG4856

COG function: function code S; Uncharacterized protein conserved in bacteria

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Contains 4 YbbR-like domains [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012505 [H]

Pfam domain/function: PF07949 YbbR [H]

EC number: NA

Molecular weight: Translated: 44940; Mature: 44940

Theoretical pI: Translated: 4.82; Mature: 4.82

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.2 %Met     (Translated Protein)
0.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.2 %Met     (Mature Protein)
0.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRPSLRRETVARLALAFVLAFGLWAWVEATNDPETQRTISNVPVLPRGLSPQLVVTSELP
CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCC
TVTVRIQGAQSRVQSFESGAIQAWIDLRDVDSPGTYIRPVRVQLPSRLRLREVVPQEVTV
EEEEEEECHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHCCHHHHH
QIDRLVERGDVPVQVIFTGQIPPNLQVLSTTLDPATVIVRGPQQRVENIARVTAPLQLAG
HHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCEEECC
RTESFQESVTLIPVDANGVTVPGITVEPSTAVVSVQLRVRGQVRRVVPTIVGADKLAPGY
CCCCHHCCEEEEEECCCCEECCCEEECCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCC
ELAGPPTVFPSDEVVIEGPESALAAIPYLTTTPIDVSGWSESRILWDVPIDTSRLPSGVT
CCCCCCCCCCCCCEEEECCCHHHEECCEEEECCEEECCCCCCEEEEECCCCHHHCCCCCE
VDPKTVNVSVQIRRAEETRSLQGLPITVVNARPGTTVELTPSTVDLEVSGPSTVLEQLKP
ECCEEEEEEEEEEECCHHCCCCCCCEEEEECCCCCEEEECCCEEEEEECCHHHHHHHCCC
GDILVIVDVENAEQGIYQLPVRVTLPPEVRYERLSPQVVQVTIRSVQPTPSPTP
CCEEEEEECCCCCCCEEEEEEEEECCCCHHHHHCCCEEEEEEEEECCCCCCCCC
>Mature Secondary Structure
MRPSLRRETVARLALAFVLAFGLWAWVEATNDPETQRTISNVPVLPRGLSPQLVVTSELP
CCCCHHHHHHHHHHHHHHHHHHHHHEEECCCCCHHHHHHHCCCCCCCCCCCCEEEEECCC
TVTVRIQGAQSRVQSFESGAIQAWIDLRDVDSPGTYIRPVRVQLPSRLRLREVVPQEVTV
EEEEEEECHHHHHHHHCCCCEEEEEEEEECCCCCCEEEEEEEECCCCHHHHHHCCHHHHH
QIDRLVERGDVPVQVIFTGQIPPNLQVLSTTLDPATVIVRGPQQRVENIARVTAPLQLAG
HHHHHHHCCCCCEEEEEECCCCCCCEEEEECCCCEEEEEECCHHHHHHHHHHHCCEEECC
RTESFQESVTLIPVDANGVTVPGITVEPSTAVVSVQLRVRGQVRRVVPTIVGADKLAPGY
CCCCHHCCEEEEEECCCCEECCCEEECCCCEEEEEEEEECCHHHHHHHHHHCCCCCCCCC
ELAGPPTVFPSDEVVIEGPESALAAIPYLTTTPIDVSGWSESRILWDVPIDTSRLPSGVT
CCCCCCCCCCCCCEEEECCCHHHEECCEEEECCEEECCCCCCEEEEECCCCHHHCCCCCE
VDPKTVNVSVQIRRAEETRSLQGLPITVVNARPGTTVELTPSTVDLEVSGPSTVLEQLKP
ECCEEEEEEEEEEECCHHCCCCCCCEEEEECCCCCEEEECCCEEEEEECCHHHHHHHCCC
GDILVIVDVENAEQGIYQLPVRVTLPPEVRYERLSPQVVQVTIRSVQPTPSPTP
CCEEEEEECCCCCCCEEEEEEEEECCCCHHHHHCCCEEEEEEEEECCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 9384377 [H]