| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is ybbP [H]
Identifier: 221632700
GI number: 221632700
Start: 678006
End: 678920
Strand: Reverse
Name: ybbP [H]
Synonym: trd_0688
Alternate gene names: 221632700
Gene position: 678920-678006 (Counterclockwise)
Preceding gene: 221632701
Following gene: 221632699
Centisome position: 33.9
GC content: 60.77
Gene sequence:
>915_bases ATGCCCGAGCTACCCTGGATTTTCACCCGCATCGATCTGCGGGCCCTGGTGGATATACTGTCTGTGACCCTCATTTTCTA TTGGCTCTTGTGGGTCATCCAGGGAACGAGAGCCGCCCAGCTCGTCCGTGGTCTCGTCATTTTCGTTATCCTCGTGGTCG GCGCAGCGAACCTCTTCCATCTCCAGGCGTTGAACTGGCTTTTGAGCCAGGCACTCCCAGCGCTCATCGTCGCGATACCG GTGGTTTTCCAGCCCGAGCTGCGCCGCGCACTCGAGCGGCTCGGGCATACTGGGGCTTGGCTACGCGCCCCTTTAGGTAG TCACGAACCGCAGACGGAGGAAACGATCGAGGAGATTACCAAGGCTGTCGCGCAGTTGGCCCGGCTCCATTATGGTGCCC TCATCGTCATCGAGCGTGAGACGGGTCTTCAAGACTACGCGGATCGTGGCATCCCCCTCGATGCGGCCCTCACACAACAA CTCTTGGTCAACATCTTCTTCCCGAACTCGCCGCTGCACGACGGAGCGGTTATCATCCGTGGCAACCGGATACTCGCTGC CGGGTGTGTTCTGCCCCTCAGCGAGAACTTGACCGATCCCCAACTCGGCACACGCCACCGCGCCGGCGTCGGCATTACCG AGGAGTCGGATGCCATCGCGATCATCGTCTCGGAGGAGAGTGGACAGATTTCTCTCGCCGTGAATGGCCGGTTGTATCGA AACATCGATATCGAACGCCTTCGCCGTGCCTTGCGCGCACTCCTCCATGTCGAAGGAACCGGCCGACGACGTCTCTCGAC CTTGCTAGCGTCATCCGCGAGCGGTACAGACGCTCCCGATGCGAAACGAAGAAGGGAACCGACCGGTGCAACGACGCGCG AGGATACTCCGGCCTCTCCGTCACGCATGGGCTAG
Upstream 100 bases:
>100_bases CGCGCTACCTCTTCGCCCGCACTGACGCGGGGGCCGCGAGCGCACCAGGTGTTAGAATTCGATCAGCGCGCTGGAGTAGC GGCTAACAGGGACGAGCGCG
Downstream 100 bases:
>100_bases CGTGCGACCATCGCTGCGTCGGGAGACTGTCGCTCGCCTCGCGCTCGCTTTCGTTCTCGCCTTCGGGCTCTGGGCTTGGG TCGAAGCGACGAACGATCCG
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 304; Mature: 303
Protein sequence:
>304_residues MPELPWIFTRIDLRALVDILSVTLIFYWLLWVIQGTRAAQLVRGLVIFVILVVGAANLFHLQALNWLLSQALPALIVAIP VVFQPELRRALERLGHTGAWLRAPLGSHEPQTEETIEEITKAVAQLARLHYGALIVIERETGLQDYADRGIPLDAALTQQ LLVNIFFPNSPLHDGAVIIRGNRILAAGCVLPLSENLTDPQLGTRHRAGVGITEESDAIAIIVSEESGQISLAVNGRLYR NIDIERLRRALRALLHVEGTGRRRLSTLLASSASGTDAPDAKRRREPTGATTREDTPASPSRMG
Sequences:
>Translated_304_residues MPELPWIFTRIDLRALVDILSVTLIFYWLLWVIQGTRAAQLVRGLVIFVILVVGAANLFHLQALNWLLSQALPALIVAIP VVFQPELRRALERLGHTGAWLRAPLGSHEPQTEETIEEITKAVAQLARLHYGALIVIERETGLQDYADRGIPLDAALTQQ LLVNIFFPNSPLHDGAVIIRGNRILAAGCVLPLSENLTDPQLGTRHRAGVGITEESDAIAIIVSEESGQISLAVNGRLYR NIDIERLRRALRALLHVEGTGRRRLSTLLASSASGTDAPDAKRRREPTGATTREDTPASPSRMG >Mature_303_residues PELPWIFTRIDLRALVDILSVTLIFYWLLWVIQGTRAAQLVRGLVIFVILVVGAANLFHLQALNWLLSQALPALIVAIPV VFQPELRRALERLGHTGAWLRAPLGSHEPQTEETIEEITKAVAQLARLHYGALIVIERETGLQDYADRGIPLDAALTQQL LVNIFFPNSPLHDGAVIIRGNRILAAGCVLPLSENLTDPQLGTRHRAGVGITEESDAIAIIVSEESGQISLAVNGRLYRN IDIERLRRALRALLHVEGTGRRRLSTLLASSASGTDAPDAKRRREPTGATTREDTPASPSRMG
Specific function: Unknown
COG id: COG1624
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR014046 - InterPro: IPR003390 [H]
Pfam domain/function: PF02457 DisA_N [H]
EC number: NA
Molecular weight: Translated: 33385; Mature: 33254
Theoretical pI: Translated: 7.81; Mature: 7.81
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.3 %Cys (Translated Protein) 0.7 %Met (Translated Protein) 1.0 %Cys+Met (Translated Protein) 0.3 %Cys (Mature Protein) 0.3 %Met (Mature Protein) 0.7 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPELPWIFTRIDLRALVDILSVTLIFYWLLWVIQGTRAAQLVRGLVIFVILVVGAANLFH CCCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LQALNWLLSQALPALIVAIPVVFQPELRRALERLGHTGAWLRAPLGSHEPQTEETIEEIT HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH KAVAQLARLHYGALIVIERETGLQDYADRGIPLDAALTQQLLVNIFFPNSPLHDGAVIIR HHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCEEEEE GNRILAAGCVLPLSENLTDPQLGTRHRAGVGITEESDAIAIIVSEESGQISLAVNGRLYR CCEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEE NIDIERLRRALRALLHVEGTGRRRLSTLLASSASGTDAPDAKRRREPTGATTREDTPASP CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC SRMG CCCC >Mature Secondary Structure PELPWIFTRIDLRALVDILSVTLIFYWLLWVIQGTRAAQLVRGLVIFVILVVGAANLFH CCCCEEHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHH LQALNWLLSQALPALIVAIPVVFQPELRRALERLGHTGAWLRAPLGSHEPQTEETIEEIT HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCCCCCCCCCCCCCCCHHHHHHHHH KAVAQLARLHYGALIVIERETGLQDYADRGIPLDAALTQQLLVNIFFPNSPLHDGAVIIR HHHHHHHHHCCCEEEEEECCCCCHHHHHCCCCCHHHHHHHHHHEEECCCCCCCCCEEEEE GNRILAAGCVLPLSENLTDPQLGTRHRAGVGITEESDAIAIIVSEESGQISLAVNGRLYR CCEEEEECEEEECCCCCCCCCCCCCCCCCCCCCCCCCEEEEEEECCCCEEEEEECCEEEE NIDIERLRRALRALLHVEGTGRRRLSTLLASSASGTDAPDAKRRREPTGATTREDTPASP CCCHHHHHHHHHHHHHCCCCCHHHHHHHHHCCCCCCCCCCHHHHCCCCCCCCCCCCCCCC SRMG CCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 7.0
TargetDB status: NA
Availability: NA
References: 9274029; 9384377 [H]