| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632595
Identifier: 221632595
GI number: 221632595
Start: 567553
End: 569280
Strand: Reverse
Name: 221632595
Synonym: trd_0570
Alternate gene names: NA
Gene position: 569280-567553 (Counterclockwise)
Preceding gene: 221632596
Following gene: 221632594
Centisome position: 28.42
GC content: 62.79
Gene sequence:
>1728_bases TTGGGGCAAACGCCTATTCTTCGCCCACTCCAGCCGAATGGACGAGTCACCACCGTCCCGCGGACAGCAGCCAGCGCGAT CGGGAAGCCTCGCTGGTGCAATCGGCTCGTTCATCTCGTGCTCGCTCTGCTCGGGCTCTCGGCGACACTCTTCACGCTCC TCGTCACCTGGAACGAGCGTTCCCGAGCGATCACCGCTCCCCTCCTGCTCGGGCGCTATGCTGCGGCAGGGGCTCTTGCC ACCGACGGACGAGCCATTGTCCTTGCCATCCCGGAGACAGCGGACTCGACCCTCCTGCTCGAGGTTTCCGGCAACGAGCA TCACGCCACGCTTACTCGCTCAACCGGCCAAATTTCTGAGCTCGCTCTGGCGCAGGGAACGGCTCTCTGGCTGGAGCGCT CATGTACCGACTGTTCCGGTCGCATACGGGCTCTTCGACTCGAAACACGAGAAACGTGGACGCTGGCCGAGACCGGTATC CGTTCCGGGCCACGCGCCAACGGCCGCTGGGCAGCGTGGGTCGCGCGCAATGGGACCGATCGTCTTTTCGTCGCTGATCT CGAAAACACGCGCCATCCACCACGCATCCTCACCGTGCTCCCTCCAGAGCACGCGATCACCGATCTCCAGTTGCGCGCTG GCCGTGTGGCGTGGGTCGAAGTCACGAGAACCGAGGAGTGGCGCATCCAGCTTCAACCTGTCGCGAGCGCTGACGCTCCG GTGACAGTGCTCCAAGGGGAGGGAACTCCGCCATCGATCCTCCTCAGCAACGATGCCTTGATCACGATCGACCAGACGAT GCGAGTCATCTCCCTCGATGAACCCCGACTGAACGTACCCATTTGGGAGAGTGTCCCGAAAGCAGTCACGGCGGACGGAC GATATGTGTTCTGGATCGATACAGCTCTCCCGGAAACCGGACGACGAGCCATCATGGCCTACGACACACTGAGCAAGAGT CGTTTCCTCGCCGTACCTGACGCGACCTATGTCAGTCAGCTGGCAGTCGGCGGTGATCGATTGGTCTGGTTCCAAGAGCA TGGACCCGATGACGTCTCCCTCTGGGCCGCACCGATCGCGGACCTCTTGCCGACGGCTCGCCGGGCGAAGCCCGAGAGCC AGAATCCCGGTTGGCGCTATTTCCCGGAGACCGGTCACTATCTGGCGAACGGATTCCGGCACTTTTGGGAGCAGTTCGGC GGAGCGAGCCTCTTCGGCTTTCCACTGTCGGAAGAATTCGACGAATACGATCCGGATGCTGGTCAGTTCCGCACAGTCCA ATACTTCGAACGTGCCCGCTTCGTGTGGATTCCGGACTCACCGATCGCCCTCGATAGTGTCGTGCTCGACCACATCGGGG TCGAACTTGTCCATCAGCTCGGACTCGCATCGGCACGAGTCTTTCGCTCACCCGCTCCTGCATCCGACGGAGCAGGGATG ACGACTTGTCGCACCTTCCCAGAAACCGGTCACGAGCTGTGTGGGCCGCTGCTCGATGCCTGGTTACACATCGGATCGAG CGTAACCGCGCGCATGCCACCCGATCAGGCCGCCCTGCTCATCACTGGGCTGGCTATCAGTGAGCCGACCGTGCTCCCGG ACGGCACGATCGTGCAGTACTTCGAGCGCGCCCGTTTGGAATTCCGACCGCAGGCCGAGCCCGAACGAGCCGTCTCGCTA GGCCGGATCGGGGCAGAAATCCTCGCCGCGCGTGACTGGCTCCGGTGA
Upstream 100 bases:
>100_bases GACTGATCGGCTAGCCAAGATGAGCAACAGTGCTCCTCCCTTTCGTCTCTACTGAGACCGCGTCAGCGGACGATACTCAG AGTGAGGAGAGGAGCAGCAG
Downstream 100 bases:
>100_bases AACCGTTAACCGCCAACGCACTGCATGCCGCGTCGTGCGCGGTGATCGCGCGCTCTCAGGCGACAGTGGTCGTCGATTCC TCTGCTGCACGATCGGCAGC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 575; Mature: 574
Protein sequence:
>575_residues MGQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNERSRAITAPLLLGRYAAAGALA TDGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISELALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGI RSGPRANGRWAAWVARNGTDRLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAP VTVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWIDTALPETGRRAIMAYDTLSKS RFLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIADLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFG GASLFGFPLSEEFDEYDPDAGQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGM TTCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQYFERARLEFRPQAEPERAVSL GRIGAEILAARDWLR
Sequences:
>Translated_575_residues MGQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNERSRAITAPLLLGRYAAAGALA TDGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISELALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGI RSGPRANGRWAAWVARNGTDRLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAP VTVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWIDTALPETGRRAIMAYDTLSKS RFLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIADLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFG GASLFGFPLSEEFDEYDPDAGQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGM TTCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQYFERARLEFRPQAEPERAVSL GRIGAEILAARDWLR >Mature_574_residues GQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNERSRAITAPLLLGRYAAAGALAT DGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISELALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGIR SGPRANGRWAAWVARNGTDRLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAPV TVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWIDTALPETGRRAIMAYDTLSKSR FLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIADLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFGG ASLFGFPLSEEFDEYDPDAGQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGMT TCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQYFERARLEFRPQAEPERAVSLG RIGAEILAARDWLR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 63256; Mature: 63124
Theoretical pI: Translated: 6.11; Mature: 6.11
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.7 %Met (Mature Protein) 1.6 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MGQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNER CCCCCCCCCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCC SRAITAPLLLGRYAAAGALATDGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISE CCEEEHHHHHHHHHHCCCEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHH LALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGIRSGPRANGRWAAWVARNGTD HHHHCCCEEEEECCCCCCCCCEEEEEEECCCEEEHHHHCCCCCCCCCCCEEEEEEECCCC RLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAP EEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCEEEEEEEEECCEEEEEEEECCCCCCC VTVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWID EEEEECCCCCCEEEEECCEEEEEECCEEEEECCCCCCCCCHHHCCCCCEECCCCEEEEEE TALPETGRRAIMAYDTLSKSRFLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIA CCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH DLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFGGASLFGFPLSEEFDEYDPDA HHCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHCCCCC GQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGM CCCHHHEEHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCC TTCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQY CEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHH FERARLEFRPQAEPERAVSLGRIGAEILAARDWLR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure GQTPILRPLQPNGRVTTVPRTAASAIGKPRWCNRLVHLVLALLGLSATLFTLLVTWNER CCCCCCCCCCCCCCEEECCCHHHHHCCCCHHHHHHHHHHHHHHHHHHHEEEEEEEECCC SRAITAPLLLGRYAAAGALATDGRAIVLAIPETADSTLLLEVSGNEHHATLTRSTGQISE CCEEEHHHHHHHHHHCCCEECCCCEEEEEECCCCCCEEEEEECCCCCEEEEECCCCCHHH LALAQGTALWLERSCTDCSGRIRALRLETRETWTLAETGIRSGPRANGRWAAWVARNGTD HHHHCCCEEEEECCCCCCCCCEEEEEEECCCEEEHHHHCCCCCCCCCCCEEEEEEECCCC RLFVADLENTRHPPRILTVLPPEHAITDLQLRAGRVAWVEVTRTEEWRIQLQPVASADAP EEEEEECCCCCCCCEEEEECCCCCCCCCEEEECCEEEEEEEEECCEEEEEEEECCCCCCC VTVLQGEGTPPSILLSNDALITIDQTMRVISLDEPRLNVPIWESVPKAVTADGRYVFWID EEEEECCCCCCEEEEECCEEEEEECCEEEEECCCCCCCCCHHHCCCCCEECCCCEEEEEE TALPETGRRAIMAYDTLSKSRFLAVPDATYVSQLAVGGDRLVWFQEHGPDDVSLWAAPIA CCCCCCCCEEEEEEECCCCCEEEECCCHHHHHHHHCCCCEEEEEECCCCCCHHHHHHHHH DLLPTARRAKPESQNPGWRYFPETGHYLANGFRHFWEQFGGASLFGFPLSEEFDEYDPDA HHCCHHHHCCCCCCCCCEEECCCCCHHHHHHHHHHHHHHCCCEEECCCCCCHHHHCCCCC GQFRTVQYFERARFVWIPDSPIALDSVVLDHIGVELVHQLGLASARVFRSPAPASDGAGM CCCHHHEEHHCEEEEEECCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCCCCCCC TTCRTFPETGHELCGPLLDAWLHIGSSVTARMPPDQAALLITGLAISEPTVLPDGTIVQY CEECCCCCCHHHHHHHHHHHHHHCCCCEEECCCCCCEEEEEEEEECCCCCCCCCCHHHHH FERARLEFRPQAEPERAVSLGRIGAEILAARDWLR HHHHCCCCCCCCCHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA