Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

Click here to switch to the map view.

The map label for this gene is 221632570

Identifier: 221632570

GI number: 221632570

Start: 539789

End: 539911

Strand: Reverse

Name: 221632570

Synonym: trd_0545

Alternate gene names: NA

Gene position: 539911-539789 (Counterclockwise)

Preceding gene: 221632572

Following gene: 221632569

Centisome position: 26.96

GC content: 66.67

Gene sequence:

>123_bases
ATGCTCGGCGACCGCGACGGTCACTGTACGGACACCAGTATGGGGCGGAACCGCTGCTGCGTCAACCGGAACCCGTTTCC
GGACGGCTGCTATACTGCTGCCCGGCGCATCGGCGCTCGCTGA

Upstream 100 bases:

>100_bases
TTGCGTCTCCAAGTCCGGTTCGGGAGTGATCTTGATCCGACCGCTCTTGAGTGCGGCGATGATATCCCGATCCGACAGGA
TCATGTGTCTCCCCCGTTCG

Downstream 100 bases:

>100_bases
GAACCGAGGGAAATCATGACCAGCGATCGTCCACCTGATGGTTCGCTTCCACCGACCCGATTCACGGCTCGGCAACTGCG
AGCCGCTCGACAGGGATCCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 40; Mature: 40

Protein sequence:

>40_residues
MLGDRDGHCTDTSMGRNRCCVNRNPFPDGCYTAARRIGAR

Sequences:

>Translated_40_residues
MLGDRDGHCTDTSMGRNRCCVNRNPFPDGCYTAARRIGAR
>Mature_40_residues
MLGDRDGHCTDTSMGRNRCCVNRNPFPDGCYTAARRIGAR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 4445; Mature: 4445

Theoretical pI: Translated: 8.68; Mature: 8.68

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

10.0 %Cys     (Translated Protein)
5.0 %Met     (Translated Protein)
15.0 %Cys+Met (Translated Protein)
10.0 %Cys     (Mature Protein)
5.0 %Met     (Mature Protein)
15.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLGDRDGHCTDTSMGRNRCCVNRNPFPDGCYTAARRIGAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC
>Mature Secondary Structure
MLGDRDGHCTDTSMGRNRCCVNRNPFPDGCYTAARRIGAR
CCCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA