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The map label for this gene is lytR [H]

Identifier: 221632569

GI number: 221632569

Start: 538319

End: 539773

Strand: Reverse

Name: lytR [H]

Synonym: trd_0544

Alternate gene names: 221632569

Gene position: 539773-538319 (Counterclockwise)

Preceding gene: 221632570

Following gene: 221632565

Centisome position: 26.95

GC content: 63.44

Gene sequence:

>1455_bases
ATGACCAGCGATCGTCCACCTGATGGTTCGCTTCCACCGACCCGATTCACGGCTCGGCAACTGCGAGCCGCTCGACAGGG
ATCCTTCGAGTCGCTCGACGCTCCAGAGAGCGTCCCGCCGCGACCGTCGCGCCGGCGCGTCTCCCTCCCCGCTCTTGCGG
CGACTCTCCTTCTCGTCATCGTTGCTGGCATCGCTGCCTACCTCGCTCCGCTCGCCTGGGCCAGCTGGCGAGCGTATCAG
CGCGTGTTCACGACACCCATCCCGCGTGCGAACGTCACCATCAATGCCCAAGGCACACCGGAAGTCGTTCTGGTCTCACC
GAACGACCCAGCGATACAGTTGCCCGATTGGGACAAGAAAGATCGCATCAATGTGCTTCTGCTCGGAGTCGATCGACGCG
AAGCAGGAGACGTTCCCCGCGCCGATACCATCATCGTGGTGACGATCGATCCACTCACCAAGGACGTCGGGATGCTCTCC
ATTCCACGGGACCTCCTCGTGACGATCCCGGGATATGGCCAAGAGAAGATCAATGCTGCCTATCCTCTCGGAATGAGTTC
GCCCCTTACCGGACCAGGTTTGCTCCGGGCAACGATCGAGTACAACTTCGGTATTCCGATTCACTACTATGCAGAGGTCG
ACTTCGAAGGTTTCGTCCGTATCGTGGACACGCTCGGTGGCGTCGTCGTCGACGTTCCAGCACCGATCAAAGACGACGAG
TATCCCGGCGAAGACTACAACTACACCCGCGTCTACTTCGCTCCTGGCCTCCAGCATATGGATGGCCGAACGGCGCTCCG
CTATGTGCGAACGAGGCACGACGACAACGATTTCTCGCGCGGTTACCGGCAACAGCAGGTGCTTCGTGCGCTGCGCGAGC
AGGGACTACGGCTCGATCTGCTCCGCAAGGCTCCGCAGCTGGTGGACGCGCTCGCCGATACGGTCCGCACCGACCTGAGC
CCACAGCAAGTACTCGCCCTGGCTAAGCTCGGCAGCGAAATTCCGCGCGAGCGCATCCGTTCCTTCACGCTGCTCGAGGC
GACGACCAGTTACTGGGAACCGGGCCAGCCCTTCTACCTCATCCCGAACTGGCCAGCGATCCAGGCGATTCTCGACGAAA
TGTTCCCGCCCCGCGAGGGTCAGCCGCGACCGCGTGTTCGTTCCACCACGGTCGCTCCACCGGCTCAGCCATTGGCCCCT
GATCTCGTCGAGCCCGTACAGACACCACCACCCGAAGTGCAGGCACCGGTCCAGCCGCAACCGACCGAGACTGCGCCGGT
CGAAACCGAACCCACCCCGTCTACCCCCACCCCAGGAACCCAACTCACCCCGACGCTGCCGCCCGCAACCCCCACTCCGC
ACGGGATGCACACACCAGTACCGACGGTCGTTCCGACCGCGGAATCGACCACGCCCGAGGCGACCCCTACCCCGGAAGGG
ACACCGACGCCCTGA

Upstream 100 bases:

>100_bases
TATGGGGCGGAACCGCTGCTGCGTCAACCGGAACCCGTTTCCGGACGGCTGCTATACTGCTGCCCGGCGCATCGGCGCTC
GCTGAGAACCGAGGGAAATC

Downstream 100 bases:

>100_bases
ATCGCTCGACCGATAAGGCTCACATCACCTCGGGCGCAGCGATGCCGAGCAGCTGCAAGCCATTGGCCAGTGTTTGCCGC
GCCGCAGCGACTATCGCCAA

Product: putative transcription regulator

Products: NA

Alternate protein names: Membrane-bound protein lytR [H]

Number of amino acids: Translated: 484; Mature: 483

Protein sequence:

>484_residues
MTSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVIVAGIAAYLAPLAWASWRAYQ
RVFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKKDRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLS
IPRDLLVTIPGYGQEKINAAYPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDE
YPGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDLLRKAPQLVDALADTVRTDLS
PQQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYLIPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAP
DLVEPVQTPPPEVQAPVQPQPTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEG
TPTP

Sequences:

>Translated_484_residues
MTSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVIVAGIAAYLAPLAWASWRAYQ
RVFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKKDRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLS
IPRDLLVTIPGYGQEKINAAYPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDE
YPGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDLLRKAPQLVDALADTVRTDLS
PQQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYLIPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAP
DLVEPVQTPPPEVQAPVQPQPTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEG
TPTP
>Mature_483_residues
TSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVIVAGIAAYLAPLAWASWRAYQR
VFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKKDRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLSI
PRDLLVTIPGYGQEKINAAYPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDEY
PGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDLLRKAPQLVDALADTVRTDLSP
QQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYLIPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAPD
LVEPVQTPPPEVQAPVQPQPTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEGT
PTP

Specific function: Attenuator role for operon expression [H]

COG id: COG1316

COG function: function code K; Transcriptional regulator

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the LytR/CpsA/Psr regulatory protein family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR004474 [H]

Pfam domain/function: PF03816 LytR_cpsA_psr [H]

EC number: NA

Molecular weight: Translated: 53015; Mature: 52884

Theoretical pI: Translated: 5.08; Mature: 5.08

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.0 %Met     (Mature Protein)
1.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVI
CCCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHH
VAGIAAYLAPLAWASWRAYQRVFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCEEECCCCCCC
DRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLSIPRDLLVTIPGYGQEKINAA
CCEEEEEEECCCHHCCCCCCCCEEEEEEECCCCCCCCCEECCHHHEEECCCCCHHHCCEE
YPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDE
CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHCCEEEECCCCCCCCC
YPGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDL
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEHH
LRKAPQLVDALADTVRTDLSPQQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCEEE
IPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAPDLVEPVQTPPPEVQAPVQPQ
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
PTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
TPTP
CCCC
>Mature Secondary Structure 
TSDRPPDGSLPPTRFTARQLRAARQGSFESLDAPESVPPRPSRRRVSLPALAATLLLVI
CCCCCCCCCCCCCHHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCEECHHHHHHHHHHHH
VAGIAAYLAPLAWASWRAYQRVFTTPIPRANVTINAQGTPEVVLVSPNDPAIQLPDWDKK
HHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEECCCCCCEEEECCCCCEEECCCCCCC
DRINVLLLGVDRREAGDVPRADTIIVVTIDPLTKDVGMLSIPRDLLVTIPGYGQEKINAA
CCEEEEEEECCCHHCCCCCCCCEEEEEEECCCCCCCCCEECCHHHEEECCCCCHHHCCEE
YPLGMSSPLTGPGLLRATIEYNFGIPIHYYAEVDFEGFVRIVDTLGGVVVDVPAPIKDDE
CCCCCCCCCCCCCEEEEEEEECCCCCEEEEEEECHHHHHHHHHHHCCEEEECCCCCCCCC
YPGEDYNYTRVYFAPGLQHMDGRTALRYVRTRHDDNDFSRGYRQQQVLRALREQGLRLDL
CCCCCCCEEEEEECCCCCCCCCHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCEEHH
LRKAPQLVDALADTVRTDLSPQQVLALAKLGSEIPRERIRSFTLLEATTSYWEPGQPFYL
HHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHEEHHHHHHCCCCCCCCEEE
IPNWPAIQAILDEMFPPREGQPRPRVRSTTVAPPAQPLAPDLVEPVQTPPPEVQAPVQPQ
CCCCHHHHHHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHCCCCCCCCCCCCCCC
PTETAPVETEPTPSTPTPGTQLTPTLPPATPTPHGMHTPVPTVVPTAESTTPEATPTPEG
CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCCCC
TPTP
CCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 12235376 [H]