| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is tenA [H]
Identifier: 221632564
GI number: 221632564
Start: 533457
End: 534122
Strand: Reverse
Name: tenA [H]
Synonym: trd_0539
Alternate gene names: 221632564
Gene position: 534122-533457 (Counterclockwise)
Preceding gene: 221632565
Following gene: 221632560
Centisome position: 26.67
GC content: 60.96
Gene sequence:
>666_bases ATGACCAGCTTCACCCAAGAGCTCTGGCGCTCGATCGATCCGATCTACCAGGCGATCGTCGTTCACCCCTTCCTCGTCGG CCTGACCGACGGCACCTTACCCGAAGAAGCATTTCGCTTTTACGTCGTGCAGGACGCACTTTACCTGCAGGACTATGCCC GCTGTCTCGCGCTGGCTGCTGCCAAGGCACCGCGCGAGACGTGGTGCGAGCTCTTTGCCGACCACGCCAAAGTAGCGCTG GTCGTGGAGCGTGCCTTGCACGAGAGTTTCTTCGCTGCCTGGGGACTTTCTCCCGACAAGATCGCTGGCACGCCGTACGC GCCGACGAACCTCGCGTACACCTCCTATCTTTTGCGGGTCGCCTACGAGCGTCCGTTCGAGGAGGTCATCGGTGCACTGC TTCCCTGCTATTGGATCTACTGGGAAGTGGGCAAGCACCTGGAACGATCTGGTTCACCGAACCCACTGTATCAGAAGTGG ATCGACACTTATGCGTCGGAAGAGTACGCAGCTGTCGTCCAGGCGGTACTGGATGTCGCTGACCAGGTGGTGACCGACCT CCCCGAGTCGCGCCGGCAACCCATTCGGACACACTTCGTTACGACCGCCCGCTACGAGTGGATGTTCTGGGACGCTGCCT GGCGCTTGGAGCGCTGGCCAGTGTGA
Upstream 100 bases:
>100_bases TATTCGGGCTGCCTTTCTGGCCACTGCTCGCTACGAGTACCTCTTCTGGGACATGGTCTATACCGGCTCCAACTGGCCCA TATAGCGAGAGGAGTGGATG
Downstream 100 bases:
>100_bases GCCTCTGGCGTTCGCACCCGGCCGAGGACCGAGAACGCGTACCACTGGGCGCAGTGATGCAAAGATCGACCGCAGCAGCA GGTCCGCAAAGCGCGTGGCT
Product: TENA/THI-4 family
Products: NA
Alternate protein names: Thiaminase II; Transcriptional activator tenA [H]
Number of amino acids: Translated: 221; Mature: 220
Protein sequence:
>221_residues MTSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAAAKAPRETWCELFADHAKVAL VVERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRVAYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKW IDTYASEEYAAVVQAVLDVADQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV
Sequences:
>Translated_221_residues MTSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAAAKAPRETWCELFADHAKVAL VVERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRVAYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKW IDTYASEEYAAVVQAVLDVADQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV >Mature_220_residues TSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAAAKAPRETWCELFADHAKVALV VERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRVAYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKWI DTYASEEYAAVVQAVLDVADQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV
Specific function: Stimulates the production of several extracellular degradative enzymes at the transcriptional level, probably by interfering with degS and degU, which are required for this effect. Is not an essential protein, but affects the sporulation frequency [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiaminase-2 family [H]
Homologues:
Organism=Saccharomyces cerevisiae, GI6325378, Length=215, Percent_Identity=30.2325581395349, Blast_Score=80, Evalue=3e-16, Organism=Saccharomyces cerevisiae, GI6324517, Length=219, Percent_Identity=27.3972602739726, Blast_Score=76, Evalue=5e-15, Organism=Saccharomyces cerevisiae, GI6324997, Length=219, Percent_Identity=25.1141552511416, Blast_Score=67, Evalue=2e-12,
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016084 - InterPro: IPR004305 [H]
Pfam domain/function: PF03070 TENA_THI-4 [H]
EC number: =3.5.99.2 [H]
Molecular weight: Translated: 25561; Mature: 25430
Theoretical pI: Translated: 4.80; Mature: 4.80
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.4 %Cys (Translated Protein) 0.9 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 1.4 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.8 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAA CCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AKAPRETWCELFADHAKVALVVERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHH AYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKWIDTYASEEYAAVVQAVLDVA HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH DQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV HHHHHHCCHHHCCCHHHHHHHHHHHEEEEEHHHHHHHCCCC >Mature Secondary Structure TSFTQELWRSIDPIYQAIVVHPFLVGLTDGTLPEEAFRFYVVQDALYLQDYARCLALAA CCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHH AKAPRETWCELFADHAKVALVVERALHESFFAAWGLSPDKIAGTPYAPTNLAYTSYLLRV HCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCCCCCHHHHHHHHHHH AYERPFEEVIGALLPCYWIYWEVGKHLERSGSPNPLYQKWIDTYASEEYAAVVQAVLDVA HHHCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHH DQVVTDLPESRRQPIRTHFVTTARYEWMFWDAAWRLERWPV HHHHHHCCHHHCCCHHHHHHHHHHHEEEEEHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1898926; 9384377 [H]