| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is tenA [H]
Identifier: 221632565
GI number: 221632565
Start: 534138
End: 534782
Strand: Reverse
Name: tenA [H]
Synonym: trd_0540
Alternate gene names: 221632565
Gene position: 534782-534138 (Counterclockwise)
Preceding gene: 221632569
Following gene: 221632564
Centisome position: 26.7
GC content: 62.33
Gene sequence:
>645_bases ATGCCCAGCACCTTGCTCGACGAGCTGCTCGCCGAAGCACGACCGATTTGGCAAGCGATGATCGCGCATCCCTTCCTGCA CGAACTCGCGACCGGAACGCTCTCGCGCGAGCGCTTCCACTTTTGGGTTCAGCAGGATTACCGATTCGTCCAGGACGGCA TCCGCTTCCTGGGCCTCCTGATCGCTCGCGCACCGGATGAGGAGCTCCGACGCGGACTGCTCGACGCAGCTGTCGCCTTC CGCAACGAACTCACCATATTCGAGGAGTACGCCCGCCAGCACGCTCTCTCGCTCGCCGTCGAGCCGACGCCGATCTGTCT CGGCTATACCTCTTTCCTCCTCGCGACCGCAGCCACCGGGTCCTTGGTCGAAGCCCTCACCGTTCTCTGGTGTGCGGAAA AGGCATACTACGACGCGTGGTCAGCTGTTCGAGCACAACTCGGTCTCGCGCCAGCCTATGCGCGCTGGATCGAAAACTGG ACGAGTCCGCAATTCGCGAGCTGGGTCGATTGGCTCGGCGAACAACTGGCCAAGCGAGCCACCACGCCAGACCGACCGCC TATTCGGGCTGCCTTTCTGGCCACTGCTCGCTACGAGTACCTCTTCTGGGACATGGTCTATACCGGCTCCAACTGGCCCA TATAG
Upstream 100 bases:
>100_bases GACCTGATCTGGGTAATGCCAGCGAAGGGAGGCCATCCACTGATCCGTTCCCCTTGCACCATGTTCAGGAGGCACGTCGC CGATCTTCGGGAGGTGCTCC
Downstream 100 bases:
>100_bases CGAGAGGAGTGGATGATGACCAGCTTCACCCAAGAGCTCTGGCGCTCGATCGATCCGATCTACCAGGCGATCGTCGTTCA CCCCTTCCTCGTCGGCCTGA
Product: TENA/THI-4 family
Products: NA
Alternate protein names: Thiaminase II; Transcriptional activator tenA [H]
Number of amino acids: Translated: 214; Mature: 213
Protein sequence:
>214_residues MPSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLLIARAPDEELRRGLLDAAVAF RNELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATGSLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENW TSPQFASWVDWLGEQLAKRATTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI
Sequences:
>Translated_214_residues MPSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLLIARAPDEELRRGLLDAAVAF RNELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATGSLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENW TSPQFASWVDWLGEQLAKRATTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI >Mature_213_residues PSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLLIARAPDEELRRGLLDAAVAFR NELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATGSLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENWT SPQFASWVDWLGEQLAKRATTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI
Specific function: Stimulates the production of several extracellular degradative enzymes at the transcriptional level, probably by interfering with degS and degU, which are required for this effect. Is not an essential protein, but affects the sporulation frequency [H]
COG id: COG0819
COG function: function code K; Putative transcription activator
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: Belongs to the thiaminase-2 family [H]
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
- InterPro: IPR016084 - InterPro: IPR004305 [H]
Pfam domain/function: PF03070 TENA_THI-4 [H]
EC number: =3.5.99.2 [H]
Molecular weight: Translated: 24443; Mature: 24312
Theoretical pI: Translated: 5.05; Mature: 5.05
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.9 %Cys (Translated Protein) 1.4 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.9 %Cys (Mature Protein) 0.9 %Met (Mature Protein) 1.9 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MPSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLL CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IARAPDEELRRGLLDAAVAFRNELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH SLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENWTSPQFASWVDWLGEQLAKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC TTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI CCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCC >Mature Secondary Structure PSTLLDELLAEARPIWQAMIAHPFLHELATGTLSRERFHFWVQQDYRFVQDGIRFLGLL CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH IARAPDEELRRGLLDAAVAFRNELTIFEEYARQHALSLAVEPTPICLGYTSFLLATAATG HHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHCCH SLVEALTVLWCAEKAYYDAWSAVRAQLGLAPAYARWIENWTSPQFASWVDWLGEQLAKRA HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHC TTPDRPPIRAAFLATARYEYLFWDMVYTGSNWPI CCCCCCCHHHHHHHHHHHHHHHHHHEEECCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: 1898926; 9384377 [H]