| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632499
Identifier: 221632499
GI number: 221632499
Start: 469082
End: 471022
Strand: Reverse
Name: 221632499
Synonym: trd_0473
Alternate gene names: NA
Gene position: 471022-469082 (Counterclockwise)
Preceding gene: 221632500
Following gene: 221632497
Centisome position: 23.52
GC content: 64.66
Gene sequence:
>1941_bases ATGCGCCCCCTGCTCGTCGTGCTACATGACCGGCCGCTGCAAAGTTTGCGGGCAGCCGGACGTTTCTGGGAGATCGCTCC CACCGAGAGCGCTGCGGAACTCACTGGTCTCCTCTATCCCATCCTCACCGACGCATGGCAGGTGGCGTTGGCACTGGAAC GGCTGGGTGAACTGGCCGAGGCTGCCCTTTGCATCCTCGCTGAGCGACGTCTTCCGCTCTCCCCCAACGAGATCGCACGA GCGCTCGGCCGAGACGAGGGAGCGACGATCGCGGTCCTCCGCCAACTCTACGTGGCCGGTCTACTGGCCAGCGAGCCATC CGGTGAGGGGCCGCGCGTCTTCCTGCCAAACGAGGTCGCTCGCGTGATCCAGCGACTGGAGCACGAGCGGTCTGATCCGA TCGGGCCGGATGGTCCGCTCCCTGCACTCTTCGGTCAGCTCACCGATCATGAGTTGCTCGAACTGGCCGAGCGATACGGC TTGGCAGTCATTCCCTCCGTCACCAGTCGAGATCAGGCCCTCGGGTATCTCGTCTCCCGGCTCGTCGACCCGACGGTTCT CTACCGCATCTGCACCGGGCTTTCCCCGCGTGCTCGGCAGCTGCTGACCCATCTCGAGAGCCGTCGTGCGCCTATACCCC TGAGTGAGCTCCTGCGCGATCGTCGCTGGACGTTCGGCGAACTCCGTCGCACTGTTAGTGAACTTGCCCGCTATGGATTG GTCTGGCGGACATTCGAGGGCAGCGCCCGCTGTCTCATGGTTCTCCCGACGTTGACCCTCGGTACTTCCTCGACACCGAC TCCACAGCCGATCGACGACGTCTCGGTCACCACTCAGGCTCCTCCCCAGGCGGCTGTTCTCGACCTCCTGCTACTCCTCG CGTGCTCGCTTCGCTCCGGCACAGCCTGGCCTCGCGAGAGCCGGCCCCCCCGACCACTCGTCGCTGCGATCGCACGCCAG CACTGGTTCTGGGAAGATGCAAGCGATTCCCTCGCCTACTTCATCTTCCTTCGTCGCTGTGCGGGATCGCTCGGCCTGCT CACGCCGCAGGGTGAACTCGCTCGCCCCCGTCTTGCAGCCTGGCTCCGTGCTTCGTTCGCCGAGCAAGGACGACGACTGT TTCGAGTCTGGAGCGCAACGAGTGACCCACGCGATCGTGAACTGCTGCCAGCACTGGTCCGGCAACTCCGCACCCTCCGG GTCGGTGCGTGGTACGCGTGGAACGAAGTGGTTCGCGAGAGTCTCGGCGGCACTTCCAGCGAACGAGAAGAAGCACGACT GCAGGAATTGGAGTGGTTAGGGATCGTGCAGCGTGGGCGGACGGCTGACGGCACCCGAGCAATCCGCCTCACGAGCTGGG GAAGCTGGGCACTGGGGATCCTGCGCTCCGTTCCCCAAATCGACATGCGCGCTCTCTTCCAGACTGAGAATGGTCTCACG CTCGAGCTCCCCGTTCTCACCCCCGAAATCACGTGGATCGCCTCGCAACTGGGTACCCTCCAGTCTTCTCGTCCCGTCCC GACGTGGCTCCTTTCAGCCCGCACGGTCGAGGATTTCGTCCGGACGGAACTCCGTTCAGGATCGTTCTCGCTCTCCCTCA CCGATCTTCCCACCGCAGTGATCGAGCTCCTGGAACGCGCGCTCGGATCACCGCTCCCGTCCAGCTGGCAAGAATCCGTC CGCGCTTGGCTCGCGCACAGCAGACCGGCAGTCGTCCGCCCGGCACTCGCGGTGCGCTTCGCGAGCACGAGCGATCGTGA CCAGGCCTGGGCGCTCCTCGAAAAAGTCGTCGAGTCGATCACCCCTCTCGACGACACGACGCTCGTCGCTTGGCTTCCCG AAACGAGGGTCCGCAGGACCATCGAGTCAGTGCTCCGAAAAGGCGGCTTCCTCGTCGAACTGCAGGATCATGCCGGTACC GACCATCGGACGAAGCGCTAG
Upstream 100 bases:
>100_bases GGAGAGAGGCTGACACCGTCCAACTGGTCACGCTTGCCACCGCGCCTTGCCAGCGCATACAGTTGCGCTCGAAGTGTGGA CAACGAGCGGAGCGAAACGG
Downstream 100 bases:
>100_bases GTGCTCACGACACCCCACTTCATGCTCTACTGAGGAGACCTCGTTGCACGCTCTTGTGCAGCACGCTCGGCTCGGATGAA AACGAGCGCTTGCGCAACTG
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 646; Mature: 646
Protein sequence:
>646_residues MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAEAALCILAERRLPLSPNEIAR ALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVARVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYG LAVIPSVTSRDQALGYLVSRLVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGL VWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSGTAWPRESRPPRPLVAAIARQ HWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAAWLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLR VGAWYAWNEVVRESLGGTSSEREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLT LELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAVIELLERALGSPLPSSWQESV RAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESITPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGT DHRTKR
Sequences:
>Translated_646_residues MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAEAALCILAERRLPLSPNEIAR ALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVARVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYG LAVIPSVTSRDQALGYLVSRLVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGL VWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSGTAWPRESRPPRPLVAAIARQ HWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAAWLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLR VGAWYAWNEVVRESLGGTSSEREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLT LELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAVIELLERALGSPLPSSWQESV RAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESITPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGT DHRTKR >Mature_646_residues MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAEAALCILAERRLPLSPNEIAR ALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVARVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYG LAVIPSVTSRDQALGYLVSRLVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGL VWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSGTAWPRESRPPRPLVAAIARQ HWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAAWLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLR VGAWYAWNEVVRESLGGTSSEREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLT LELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAVIELLERALGSPLPSSWQESV RAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESITPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGT DHRTKR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 71997; Mature: 71997
Theoretical pI: Translated: 8.48; Mature: 8.48
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 0.5 %Met (Translated Protein) 1.2 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 0.5 %Met (Mature Protein) 1.2 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAE CCCEEEEECCCCHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALCILAERRLPLSPNEIARALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVA HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHH RVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYGLAVIPSVTSRDQALGYLVSR HHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH LVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGL HHCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC VWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSG EEEECCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC TAWPRESRPPRPLVAAIARQHWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAA CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH WLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLRVGAWYAWNEVVRESLGGTSS HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC EREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLT HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHCCCCCCE LELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAV EEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH IELLERALGSPLPSSWQESVRAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESI HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCHHHHEEECCCCCHHHHHHHHHHHHHHH TPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGTDHRTKR CCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC >Mature Secondary Structure MRPLLVVLHDRPLQSLRAAGRFWEIAPTESAAELTGLLYPILTDAWQVALALERLGELAE CCCEEEEECCCCHHHHHHCCCCEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH AALCILAERRLPLSPNEIARALGRDEGATIAVLRQLYVAGLLASEPSGEGPRVFLPNEVA HHHHHHHHCCCCCCHHHHHHHHCCCCCHHHHHHHHHHHHHHHHCCCCCCCCEEECCHHHH RVIQRLEHERSDPIGPDGPLPALFGQLTDHELLELAERYGLAVIPSVTSRDQALGYLVSR HHHHHHHHHCCCCCCCCCCHHHHHHHCCHHHHHHHHHHCCEEEECCCCCHHHHHHHHHHH LVDPTVLYRICTGLSPRARQLLTHLESRRAPIPLSELLRDRRWTFGELRRTVSELARYGL HHCHHHHHHHHCCCCHHHHHHHHHHHHCCCCCCHHHHHHHCCCCHHHHHHHHHHHHHHCC VWRTFEGSARCLMVLPTLTLGTSSTPTPQPIDDVSVTTQAPPQAAVLDLLLLLACSLRSG EEEECCCCCCEEEEEECCEECCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHCCCC TAWPRESRPPRPLVAAIARQHWFWEDASDSLAYFIFLRRCAGSLGLLTPQGELARPRLAA CCCCCCCCCCHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCCCCCCCCCCCCCCCHHHHH WLRASFAEQGRRLFRVWSATSDPRDRELLPALVRQLRTLRVGAWYAWNEVVRESLGGTSS HHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHCCCCC EREEARLQELEWLGIVQRGRTADGTRAIRLTSWGSWALGILRSVPQIDMRALFQTENGLT HHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCHHHHHHHHHCCHHHHHHHHCCCCCCE LELPVLTPEITWIASQLGTLQSSRPVPTWLLSARTVEDFVRTELRSGSFSLSLTDLPTAV EEECCCCCHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHHHHHHCCCCEEEEEHHHHHHH IELLERALGSPLPSSWQESVRAWLAHSRPAVVRPALAVRFASTSDRDQAWALLEKVVESI HHHHHHHHCCCCCHHHHHHHHHHHHCCCCCHHCHHHHEEECCCCCHHHHHHHHHHHHHHH TPLDDTTLVAWLPETRVRRTIESVLRKGGFLVELQDHAGTDHRTKR CCCCCCEEEEECCHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Unstructured
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA