| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221632479
Identifier: 221632479
GI number: 221632479
Start: 450364
End: 450756
Strand: Reverse
Name: 221632479
Synonym: trd_0453
Alternate gene names: NA
Gene position: 450756-450364 (Counterclockwise)
Preceding gene: 221632480
Following gene: 221632478
Centisome position: 22.5
GC content: 61.32
Gene sequence:
>393_bases ATGAACCAGTGGGAAGCGCTTGCCAGTGATTTTGCCGACCGCGTTGCCGAGATGACTGGCCAACACCTCGATTTCACGCT CGCCTCGCTGGCGATTCTCGATGATCTCCTCGATGAATGGCTCCATCTCTCCCAGGTCTATGGGAGCGAACGCCCGGACG ATCTCTCTCGCTTGGTGCTCCCCCTCGTCTCCTATGTGGGAGAGACCTTACGCCATGCCTACGGTGGAACATGGATCGAG CGCCCCTCTGGCCCAGTCCTCTGCATCGCACAGACGATCGAGTTGGACTTGCGACCGCTTGTTCAGGCTACGCTGGCCCA GCAGCACCCGCCCGCTTTCGCTCGCCTGGCTGCTGCGCTCGATCGCGAACTGGAGGACCGACTCGGAGAGTGA
Upstream 100 bases:
>100_bases TCCGCAGTCGAGCATGGATGGATGTGTCCGGACCCGCACTGCACTGCGCTGCGCCGGACGACCACTTCGCCACAGGGTAC ACTCCAGAGAGGGTGCCGCG
Downstream 100 bases:
>100_bases CACCGTGCGCATCATGGGCATCGATTTCAGTGCGGCACGCGACGCGAGTCGCAAAATCTGGCTCGCTTTTGGAAACGCTG TCAGTGACCAGCTCCACATC
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 130; Mature: 130
Protein sequence:
>130_residues MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVLPLVSYVGETLRHAYGGTWIE RPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAALDRELEDRLGE
Sequences:
>Translated_130_residues MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVLPLVSYVGETLRHAYGGTWIE RPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAALDRELEDRLGE >Mature_130_residues MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVLPLVSYVGETLRHAYGGTWIE RPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAALDRELEDRLGE
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 14507; Mature: 14507
Theoretical pI: Translated: 4.22; Mature: 4.22
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.8 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 2.3 %Cys+Met (Translated Protein) 0.8 %Cys (Mature Protein) 1.5 %Met (Mature Protein) 2.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH PLVSYVGETLRHAYGGTWIERPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAAL HHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DRELEDRLGE HHHHHHHCCC >Mature Secondary Structure MNQWEALASDFADRVAEMTGQHLDFTLASLAILDDLLDEWLHLSQVYGSERPDDLSRLVL CCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH PLVSYVGETLRHAYGGTWIERPSGPVLCIAQTIELDLRPLVQATLAQQHPPAFARLAAAL HHHHHHHHHHHHHHCCCCCCCCCCCEEEHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH DRELEDRLGE HHHHHHHCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA