| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632466
Identifier: 221632466
GI number: 221632466
Start: 435753
End: 436961
Strand: Reverse
Name: 221632466
Synonym: trd_0440
Alternate gene names: NA
Gene position: 436961-435753 (Counterclockwise)
Preceding gene: 221632473
Following gene: 221632461
Centisome position: 21.82
GC content: 58.81
Gene sequence:
>1209_bases ATGGCTGACTTTCCTGGTAAGGGCAAGGTCGCAGTCCTACGCACGACACCAGAGACCGTCCTCGCCGACATCGGGCGAGC GATGCTCATGGCCGGTTACCGCGAGGCACTCCCGCGCGATCGCGAGACGATTCTCAAGATCAACATCACCTGGGATACCT GGTATCCCGGCTGCTCGACGACCCCGTGGCAACTCGAGGGCGTTATCCGTCGCTTGAAAGCCGACGGGTACGGGCATCTC ATTGCCGCCCACAACCGAACGGTCGTCGTCGATGCCTACAAGGGCGAGCGGAACAACAAGCACAAGTACGTCGTCGACAA GTACGGCGTCGAAAACGTTCACCTCTACGAGCCACACGTCGAGTGGGTACCCTATGAACCGAAGAGTGAACTCCTCGTCC TGCACAAGATCTTCCCGGAAGGCATCCGTATTCCCAAGCTCTTCATCGGTCGAAACATCATTCATCTTCCGACCGTGAAG ACGCACGTCTTCACCACGATCACCGGCGCAATGAAGAACGCGTTCGGTGGACTCCTCAACGAGCGGCGACATTGGACACA CGCTGTCATTCACGAGACACTCGTCGATCTCCTGACGATCCAACAAGAGATCCACCCTGGCATCTTCGCGGTGATGGACG GAACCTTCGCGGGGGACGGCCCAGGACCCCGTGCCATGCGTCCTCATGAGAAGGACATCATTCTGGCTAGTGCTGACCAA GTCGCTATCGACGCCATCAGTGCCAAGTTGCAGGGATTCGATCCGCTCTCCATACCGTTCATTCGCATCGCACACGAACG AGGGTTGGGGATCGGTGATCCGCGCAAGATCGAAGTCATCGGTGAGGACATTTCCAACGAATCATGGGGATTCGTCGCAG GAGACACATTCGCGAGCCGCGGCCAGAAGCTGATTTACCACGGCCCACTCAAACCGCTGGAAAATCTCCTCTTGCGCTCG CCGCTCGTCCCCTGGTCGTATGTCGCTTCCAATGTCTATCACAACGTCTATTGGTACCCAGTGCACGGACGCCGGCGTGT CAAAGAGGCGCTTCAGACGAAATGGGGACAACTCTTCCTGAGTTACGACGACGGGAAAGTCGTCCTCCCCGGGCCTGACC CACTCGGTACAGCCATTGTCGTCGGTGGACTCGCCGCGCTCGTTGCCGGCACGATCAGCGTCGCACGGTGGTTGCGCCGG GACCACTGA
Upstream 100 bases:
>100_bases TAGCAGGTCGGAGACTGTACGGACAAGGGTCGTTCTGACGAGTGGCAACCGCTGCCACCGCGTGTTACGATCCCTAACCG TGAAACCGGAGGCTTGGCTC
Downstream 100 bases:
>100_bases TTAGTCAGCACGAGTCGGAATCCCAGCGTCGCGAACCGACATTGCCCGCCGCACCGCAGGAGCTGTCCCGTCCACCTGAC GTCGAGCGAGCGTCCGGTAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 402; Mature: 401
Protein sequence:
>402_residues MADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCSTTPWQLEGVIRRLKADGYGHL IAAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHVEWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVK THVFTTITGAMKNAFGGLLNERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQ VAIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASRGQKLIYHGPLKPLENLLLRS PLVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFLSYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRR DH
Sequences:
>Translated_402_residues MADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCSTTPWQLEGVIRRLKADGYGHL IAAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHVEWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVK THVFTTITGAMKNAFGGLLNERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQ VAIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASRGQKLIYHGPLKPLENLLLRS PLVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFLSYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRR DH >Mature_401_residues ADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCSTTPWQLEGVIRRLKADGYGHLI AAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHVEWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVKT HVFTTITGAMKNAFGGLLNERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQV AIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASRGQKLIYHGPLKPLENLLLRSP LVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFLSYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRRD H
Specific function: Unknown
COG id: COG2006
COG function: function code S; Uncharacterized conserved protein
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 44939; Mature: 44808
Theoretical pI: Translated: 9.42; Mature: 9.42
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
0.2 %Cys (Translated Protein) 1.5 %Met (Translated Protein) 1.7 %Cys+Met (Translated Protein) 0.2 %Cys (Mature Protein) 1.2 %Met (Mature Protein) 1.5 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCST CCCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCC TPWQLEGVIRRLKADGYGHLIAAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHV CCHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCC EWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVKTHVFTTITGAMKNAFGGLLN CCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH ERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQ HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCH VAIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASR HHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCEEEEECCCCCCCCCCEEECCHHHHC GQKLIYHGPLKPLENLLLRSPLVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFL CCEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCEEEE SYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRRDH EECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC >Mature Secondary Structure ADFPGKGKVAVLRTTPETVLADIGRAMLMAGYREALPRDRETILKINITWDTWYPGCST CCCCCCCCEEEEECCHHHHHHHHHHHHHHHHHHHHCCCCCCEEEEEEEEEECCCCCCCC TPWQLEGVIRRLKADGYGHLIAAHNRTVVVDAYKGERNNKHKYVVDKYGVENVHLYEPHV CCHHHHHHHHHHHCCCCEEEEEECCCEEEEEECCCCCCCCCEEEEECCCCCEEEEECCCC EWVPYEPKSELLVLHKIFPEGIRIPKLFIGRNIIHLPTVKTHVFTTITGAMKNAFGGLLN CCCCCCCCCCEEEEEECCCCCCCCCCHHHCCCEEECCCCHHHHHHHHHHHHHHHHHHHHH ERRHWTHAVIHETLVDLLTIQQEIHPGIFAVMDGTFAGDGPGPRAMRPHEKDIILASADQ HHHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCCCCCCCCCCCCCCCCCCEEEECCCH VAIDAISAKLQGFDPLSIPFIRIAHERGLGIGDPRKIEVIGEDISNESWGFVAGDTFASR HHHHHHHHHHCCCCCCCCCEEEEEHHCCCCCCCCCEEEEECCCCCCCCCCEEECCHHHHC GQKLIYHGPLKPLENLLLRSPLVPWSYVASNVYHNVYWYPVHGRRRVKEALQTKWGQLFL CCEEEEECCCHHHHHHHHHCCCCCHHHHHHHHHHCEEEEECCCHHHHHHHHHCCCCEEEE SYDDGKVVLPGPDPLGTAIVVGGLAALVAGTISVARWLRRDH EECCCEEEECCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 9.0
TargetDB status: NA
Availability: NA
References: NA