Definition Thermomicrobium roseum DSM 5159 chromosome, complete genome.
Accession NC_011959
Length 2,003,006

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The map label for this gene is 221632341

Identifier: 221632341

GI number: 221632341

Start: 316986

End: 317900

Strand: Reverse

Name: 221632341

Synonym: trd_0312

Alternate gene names: NA

Gene position: 317900-316986 (Counterclockwise)

Preceding gene: 221632349

Following gene: 221632340

Centisome position: 15.87

GC content: 66.12

Gene sequence:

>915_bases
ATGCGCGTTGCGAGCGAGCGATCCGGCGACGACGTACTCGAGCAGCTCAGCGAAATCTGGCCGAAGGCGGCGCCAGCGCG
CGTGCAGCCGGTCTTCGAGGATCTGCGCACCGCGCTGAGAGTTCCAGATATTCCATTTCCGTTTCGTCTCCTGGCCCACT
GGCCACCCTACCTCGCCTTCGCGGTGCGGCAATTCAGTCCCTTCATCCGTTCGCTCGCCTTCGAGGCCGCTGCCGACGCG
CTGCGAGCACGAGCGGCGACCTCGATCGGTTCCCCGCCGCGAAGCGAACGCCTGGCCGCAGCTCGCGCGTTGATCTTGCG
TGAGCACGAACTGGCACCGAAGATCGTGCTCATCCTCACCGCCTTCGCTGTCGGGTTGCGTGGGCGCGCGAGGGAATCTG
CACCGCCGCTCGGCACGACTCTTCCCGCGCAAGAACCGATCACTGTGCGCCCAGCGGAACTACCGCGCACGGTGGACGAA
CGCATCGCCCCGCTACCCGACCTTTCCACTGTGCTGGAAAGGGGGCGAGTGCTGCTCGCTGATCTCGCCGCGTTGCGTGG
CTCACCGGCTTTGGACGACTTCAGTCGTGCGCTCGCAGTCAGCGAACCTGCTGCTTTCGCCGAACTCCTCGCTCTGCGAC
GGAGCATCGAGGCTGACCGTCTCGCTCAGGTACGCAGCGAACTGCTCGCCCAGGCCGAGCGCGCCGTTCGACGTTTCACC
TTACCTGGAGCCAGGGTACTGCCCGACTTCATGGTGCCGGAACCGGCGCTGGCTGCAATCGATGCCGTGGTCGATCGGCT
CCGCACGATCGCGGCGGAAGCCTTCCTGGACGTCACGCTGGCACGTGTCGCCCTCGATGGGTTCGACGCTGCCAGCTCGG
CGCCCTATCCGGTACACGTTGCGGTTGACCAGTGA

Upstream 100 bases:

>100_bases
TTGCTCGTCTTGTTCTACAGTACACGAGAACCCGACACCCGTGTATGGTATCGGAGAAGAAGAGGTTCGACGACGCAGCA
TGCGAGGAGGGTCGAAACCG

Downstream 100 bases:

>100_bases
GGAGCGTTCTGCCAAAACGACGCGCCAGTGCAGCGAAAGGAAGAGAACATGCTGGATCTGCGCGCTCTGCAACGACCGCT
CAAGCAGCGCTAACGCGAAC

Product: putative halocarboxylic acid dehalogenase DehI

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 304; Mature: 304

Protein sequence:

>304_residues
MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAFAVRQFSPFIRSLAFEAAADA
LRARAATSIGSPPRSERLAAARALILREHELAPKIVLILTAFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDE
RIAPLPDLSTVLERGRVLLADLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFT
LPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHVAVDQ

Sequences:

>Translated_304_residues
MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAFAVRQFSPFIRSLAFEAAADA
LRARAATSIGSPPRSERLAAARALILREHELAPKIVLILTAFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDE
RIAPLPDLSTVLERGRVLLADLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFT
LPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHVAVDQ
>Mature_304_residues
MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAFAVRQFSPFIRSLAFEAAADA
LRARAATSIGSPPRSERLAAARALILREHELAPKIVLILTAFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDE
RIAPLPDLSTVLERGRVLLADLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFT
LPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHVAVDQ

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 32978; Mature: 32978

Theoretical pI: Translated: 6.83; Mature: 6.83

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
0.7 %Met     (Translated Protein)
0.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
0.7 %Met     (Mature Protein)
0.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAF
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH
AVRQFSPFIRSLAFEAAADALRARAATSIGSPPRSERLAAARALILREHELAPKIVLILT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
AFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDERIAPLPDLSTVLERGRVLLA
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCHHCCHHHHHHCCCCCCHHHHHHCCHHHHH
DLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFT
HHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
LPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHV
CCCHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AVDQ
EECC
>Mature Secondary Structure
MRVASERSGDDVLEQLSEIWPKAAPARVQPVFEDLRTALRVPDIPFPFRLLAHWPPYLAF
CCCCCCCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHHCCCCCCCHHHHHHHCCHHHHH
AVRQFSPFIRSLAFEAAADALRARAATSIGSPPRSERLAAARALILREHELAPKIVLILT
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHCHHHHHHHH
AFAVGLRGRARESAPPLGTTLPAQEPITVRPAELPRTVDERIAPLPDLSTVLERGRVLLA
HHHHHHCCCCCCCCCCCCCCCCCCCCCEECCHHCCHHHHHHCCCCCCHHHHHHCCHHHHH
DLAALRGSPALDDFSRALAVSEPAAFAELLALRRSIEADRLAQVRSELLAQAERAVRRFT
HHHHHCCCCCHHHHHHHHHHCCHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHC
LPGARVLPDFMVPEPALAAIDAVVDRLRTIAAEAFLDVTLARVALDGFDAASSAPYPVHV
CCCHHHCCHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCCEEEE
AVDQ
EECC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA