Click here to switch to the map view.

The map label for this gene is sodA [H]

Identifier: 221632337

GI number: 221632337

Start: 313147

End: 313764

Strand: Reverse

Name: sodA [H]

Synonym: trd_0308

Alternate gene names: 221632337

Gene position: 313764-313147 (Counterclockwise)

Preceding gene: 221632338

Following gene: 221632332

Centisome position: 15.66

GC content: 59.55

Gene sequence:

>618_bases
ATGCCGTACGAACTCCCACCGCTGCCGTATCCGTACGACGCGCTCGAGCCCTACATCGATGCGCGCACGATGGAGATTCA
TCACACCGGGCATCATGGAGCCTACGTGCGCAACGTGAACGCGGCGCTCGAAAAGCACCCAGAAATCCCGGGCATGCCGA
TCGAGGAACTCCTGCGCCGCATCAACGAAGTGCCTGAGGATATCAGGACCGCTGTCCGCAACAACGGTGGAGGCCACGCC
AACCATACCATTTTCTGGCAGATCATGGGTCCCAACGCTGGTGGTGAACCGACCGGAGAGCTGGCGCAGGCGATCGCTGA
AACGTTCGGGAGCTTCCAGCAGTTCAAGGAACAGTTCTCGGCAGCTGCCGCAGGGGTCTTCGGTTCAGGATGGGCGTGGT
TGGTACTCGATCAGAACGGCAAGCTCCAAATCATTACCAGGCCCAATCAAGACAGCCCCTACATGGACAACCTCTATCCC
GTGATGGGGCTGGACGTCTGGGAGCATGCCTATTACCTCAAGTACCAGAACCGCCGTCCTGAGTACATCGCGAACTGGTG
GAACGTGGTCAACTGGGACGCGGTGGCCCAGCGCTATCGTGAGGGTCTCAAGCGCTGA

Upstream 100 bases:

>100_bases
GCGTCATACTTCAACCAGGCGGTACGGTTTCGCAGTGGCCTCGGTGTCGTTGGCTCCGTGCCGCTGACGAGTCGGTCGAC
AAGGGAAAGGGAGGGTCACG

Downstream 100 bases:

>100_bases
CCGCGGCTGAGCATTCGGATCGATGAGCGAGCGCCGGGGGATCTCCCGGCGCTCGCTATCCGCGCCCAACCCCTCCCTCA
AGCCTCGATCGGCTCGAGTG

Product: superoxide dismutase (Mn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 205; Mature: 204

Protein sequence:

>205_residues
MPYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRRINEVPEDIRTAVRNNGGGHA
NHTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFSAAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYP
VMGLDVWEHAYYLKYQNRRPEYIANWWNVVNWDAVAQRYREGLKR

Sequences:

>Translated_205_residues
MPYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRRINEVPEDIRTAVRNNGGGHA
NHTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFSAAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYP
VMGLDVWEHAYYLKYQNRRPEYIANWWNVVNWDAVAQRYREGLKR
>Mature_204_residues
PYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRRINEVPEDIRTAVRNNGGGHAN
HTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFSAAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYPV
MGLDVWEHAYYLKYQNRRPEYIANWWNVVNWDAVAQRYREGLKR

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG0605

COG function: function code P; Superoxide dismutase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the iron/manganese superoxide dismutase family [H]

Homologues:

Organism=Homo sapiens, GI67782307, Length=199, Percent_Identity=49.748743718593, Blast_Score=199, Evalue=1e-51,
Organism=Homo sapiens, GI67782305, Length=199, Percent_Identity=49.748743718593, Blast_Score=199, Evalue=1e-51,
Organism=Homo sapiens, GI67782309, Length=199, Percent_Identity=40.2010050251256, Blast_Score=147, Evalue=7e-36,
Organism=Escherichia coli, GI1790342, Length=205, Percent_Identity=55.609756097561, Blast_Score=243, Evalue=5e-66,
Organism=Escherichia coli, GI1787946, Length=198, Percent_Identity=46.4646464646465, Blast_Score=189, Evalue=1e-49,
Organism=Caenorhabditis elegans, GI17506561, Length=203, Percent_Identity=41.3793103448276, Blast_Score=162, Evalue=1e-40,
Organism=Caenorhabditis elegans, GI17569479, Length=199, Percent_Identity=39.1959798994975, Blast_Score=153, Evalue=5e-38,
Organism=Saccharomyces cerevisiae, GI6321796, Length=207, Percent_Identity=39.6135265700483, Blast_Score=153, Evalue=2e-38,
Organism=Drosophila melanogaster, GI17136812, Length=204, Percent_Identity=43.6274509803922, Blast_Score=173, Evalue=7e-44,

Paralogues:

None

Copy number: 2980 Molecules/Cell In: Growth Phase, Minimal Media (Based on E. coli). 20 Molecules/Cell In: Stationary Phase, Rich Media (Based on E. coli). [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001189
- InterPro:   IPR019833
- InterPro:   IPR019832
- InterPro:   IPR019831 [H]

Pfam domain/function: PF02777 Sod_Fe_C; PF00081 Sod_Fe_N [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 23462; Mature: 23330

Theoretical pI: Translated: 5.83; Mature: 5.83

Prosite motif: PS00088 SOD_MN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.9 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.5 %Met     (Mature Protein)
2.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRR
CCCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
INEVPEDIRTAVRNNGGGHANHTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFS
HHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYPVMGLDVWEHAYYLKYQNRRP
HHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHCCCHHHHHHHHHHHEEEEECCCCC
EYIANWWNVVNWDAVAQRYREGLKR
HHHHHHHCCCCHHHHHHHHHHHHCC
>Mature Secondary Structure 
PYELPPLPYPYDALEPYIDARTMEIHHTGHHGAYVRNVNAALEKHPEIPGMPIEELLRR
CCCCCCCCCCHHHHHHHHCCEEEEEEECCCCCHHHHHHHHHHHHCCCCCCCCHHHHHHH
INEVPEDIRTAVRNNGGGHANHTIFWQIMGPNAGGEPTGELAQAIAETFGSFQQFKEQFS
HHHCCHHHHHHHHCCCCCCCCCEEEEEEECCCCCCCCHHHHHHHHHHHHHHHHHHHHHHH
AAAAGVFGSGWAWLVLDQNGKLQIITRPNQDSPYMDNLYPVMGLDVWEHAYYLKYQNRRP
HHHHCCCCCCEEEEEECCCCCEEEEECCCCCCCCHHCCCHHHHHHHHHHHEEEEECCCCC
EYIANWWNVVNWDAVAQRYREGLKR
HHHHHHHCCCCHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1624106 [H]