| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
Click here to switch to the map view.
The map label for this gene is 221632330
Identifier: 221632330
GI number: 221632330
Start: 304841
End: 305113
Strand: Reverse
Name: 221632330
Synonym: trd_0301
Alternate gene names: NA
Gene position: 305113-304841 (Counterclockwise)
Preceding gene: 221632331
Following gene: 221632329
Centisome position: 15.23
GC content: 60.81
Gene sequence:
>273_bases ATGAGCGCGTCACCAACGGTGCTTCGAGCAATCGATCGCGCACTCGACCGGATCCGGGAGGGATTGGCACCGGACGGGTT CGAGCTGCGCGTCGAGCGTGTCACGGACGAGGGTATCGTCGAATTAGTGCTCCAGGCATTACCCGATGCGTGCCTGGACT GCCTCGTTCCTGACCAGCTGCTGGATGCGATGCTGCGACAGGCGATCGCTCCCGTTTATCCAGCGCTACGTGAGGTCCGT TTGGAAAAGCGACTACCAGAGGAGGGACGATAA
Upstream 100 bases:
>100_bases GACATTCCAGCTGAATTGGCCGGTATCCAACTGGTGACGGTCTGATCGCTCGTGCAGAACGACAGAGGTCGATAAGGCGA AAGGAGGCCGTGGAAGAACG
Downstream 100 bases:
>100_bases TGCCAATTCTCGTGGATCCGACAGGACAAACCGGGCTCGTTACCAAGGCGAAGGCCCCACGCGTTCGACGCTCGCTACAT GGCGCGCGCGTCTGCCTGAT
Product: hypothetical protein
Products: NA
Alternate protein names: NA
Number of amino acids: Translated: 90; Mature: 89
Protein sequence:
>90_residues MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVR LEKRLPEEGR
Sequences:
>Translated_90_residues MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVR LEKRLPEEGR >Mature_89_residues SASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQLLDAMLRQAIAPVYPALREVRL EKRLPEEGR
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 10049; Mature: 9918
Theoretical pI: Translated: 4.41; Mature: 4.41
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
2.2 %Cys (Translated Protein) 2.2 %Met (Translated Protein) 4.4 %Cys+Met (Translated Protein) 2.2 %Cys (Mature Protein) 1.1 %Met (Mature Protein) 3.4 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MSASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQL CCCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH LDAMLRQAIAPVYPALREVRLEKRLPEEGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC >Mature Secondary Structure SASPTVLRAIDRALDRIREGLAPDGFELRVERVTDEGIVELVLQALPDACLDCLVPDQL CCCHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHCHHHHHHHHHHHHHHHHHHHCCCHHH LDAMLRQAIAPVYPALREVRLEKRLPEEGR HHHHHHHHHHHHHHHHHHHHHHHCCCCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA