| Definition | Thermomicrobium roseum DSM 5159 chromosome, complete genome. |
|---|---|
| Accession | NC_011959 |
| Length | 2,003,006 |
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The map label for this gene is 221632226
Identifier: 221632226
GI number: 221632226
Start: 197648
End: 198586
Strand: Reverse
Name: 221632226
Synonym: trd_0192
Alternate gene names: NA
Gene position: 198586-197648 (Counterclockwise)
Preceding gene: 221632227
Following gene: 221632225
Centisome position: 9.91
GC content: 68.37
Gene sequence:
>939_bases GTGACTCGCACGTCTCGCCTGCTTCGCCTCCTCCTCACGCTGCTGCTCGCGCTCGCGTTGGCGGGCGCGGGCAGCACGTC CTCGCGCGCTGAGCAGCCGAACGGCGCTGGACTGGTCATCCGCTACGGCGACGGCCGGATCGTCACCGCGTACGTCCAGT TCGAAGAACCGACAATCACTGGCATCGAACTCCTCCAACGTGCTGGCGTACCGGTTACGGTGGCCCAGTTCGGTGGACTG GGGCTCGCCGTCTGTGCCATCTCCGGTGAAGGATGCCCAGCGGAGGACTGTTTCTGTCGAGCCAAGAGCCAGCCAGCGTG GTTCTGGCACTATTACGGGCTCACGCCGGACGGCCGCTGGGTACTCCACCCAGTCGGTGCCTCCAACCGGATCGTCCGCG ACGGCGACGTGGACGGTTGGTCATGGACAGCCGGAGAGAGCGGCCTTCCCGCTTTGACGATCGAGGAGATCGCACGCGCG CATGGCATCGAGCGCTCGTCCGGTCCGCCTGCCACCACGCAACCGACCGCGCCGCCAGCACCCTCGGTTACCAGTCCGAC CGAACCAGCGGTGACCTCGCCCGTGACTCCAGTGCCGACCTCGGGCCAACCGGCCGTCGGATCCTCCACGACCCAGCCGG ACGGCCAACAGACTGGTCCCGCATCCTCCCCGACAGTCACTCCCACGTTGCCGACTCCGACGCTCGGAGTACTCACCCCG ACATCGCTGGCCTTTGCCGAGGCCCAGCCAACGGTTCCCCCGACCGCTGCAGCGCTCGCTGGGTCCTCGAGCACCCCCAG CATCGGGGTGACGCCGTCAGCGCCTGTGGCTGACAGCCATCCTACTGGCCCGCCCTGGGGCGCGCTCCTCTTCACGAGTC TCGCGGCCATCGTCCTGCTCGCGTACTCGTTCGCCCGCTGGCGGAGGCGGTCACCATGA
Upstream 100 bases:
>100_bases ATTTCGAGCGTGCCCGCTTCGAATGGCACCCCGGTAGCTGGCCGGAGCGGCACGATGTCTTGCTGACCCGGCTCGGCGCT CGCATCGTCGAGGAAGGCTC
Downstream 100 bases:
>100_bases ACGCGATCACCTGGTTGCTCTGGGCACTCGTGCTGGTGCTCGCGATCTCCGTGACGCGCAATCCGTTCTACTTGAGCCTG GCAGCGCTGGCCGTTGCGAC
Product: hypothetical protein
Products: NA
Alternate protein names: None
Number of amino acids: Translated: 312; Mature: 311
Protein sequence:
>312_residues MTRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTITGIELLQRAGVPVTVAQFGGL GLAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRWVLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARA HGIERSSGPPATTQPTAPPAPSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTP TSLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLLAYSFARWRRRSP
Sequences:
>Translated_312_residues MTRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTITGIELLQRAGVPVTVAQFGGL GLAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRWVLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARA HGIERSSGPPATTQPTAPPAPSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTP TSLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLLAYSFARWRRRSP >Mature_311_residues TRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTITGIELLQRAGVPVTVAQFGGLG LAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRWVLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARAH GIERSSGPPATTQPTAPPAPSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTPT SLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLLAYSFARWRRRSP
Specific function: Unknown
COG id: NA
COG function: NA
Gene ontology:
Cell location: Cytoplasmic
Metaboloic importance: NA
Operon status: Not Known
Operon components: None
Similarity: NA
Homologues:
None
Paralogues:
None
Copy number: NA
Swissprot (AC and ID): NA
Other databases:
NA
Pfam domain/function: NA
EC number: NA
Molecular weight: Translated: 32056; Mature: 31925
Theoretical pI: Translated: 6.51; Mature: 6.51
Prosite motif: NA
Important sites: NA
Signals:
None
Transmembrane regions:
None
Cys/Met content:
1.3 %Cys (Translated Protein) 0.3 %Met (Translated Protein) 1.6 %Cys+Met (Translated Protein) 1.3 %Cys (Mature Protein) 0.0 %Met (Mature Protein) 1.3 %Cys+Met (Mature Protein)
Secondary structure:
>Translated Secondary Structure MTRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTIT CCHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCHH GIELLQRAGVPVTVAQFGGLGLAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRW HHHHHHHCCCCEEHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCE VLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARAHGIERSSGPPATTQPTAPPA EEEECCCCCCEEECCCCCCCEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC PSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC TSLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLL CHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH AYSFARWRRRSP HHHHHHHHCCCC >Mature Secondary Structure TRTSRLLRLLLTLLLALALAGAGSTSSRAEQPNGAGLVIRYGDGRIVTAYVQFEEPTIT CHHHHHHHHHHHHHHHHHHCCCCCCCCCCCCCCCCEEEEEECCCEEEEEEEEECCCCHH GIELLQRAGVPVTVAQFGGLGLAVCAISGEGCPAEDCFCRAKSQPAWFWHYYGLTPDGRW HHHHHHHCCCCEEHHHHCCCEEEEEEECCCCCCHHHHHHHCCCCCEEEEEEECCCCCCCE VLHPVGASNRIVRDGDVDGWSWTAGESGLPALTIEEIARAHGIERSSGPPATTQPTAPPA EEEECCCCCCEEECCCCCCCEECCCCCCCCEEHHHHHHHHHCCCCCCCCCCCCCCCCCCC PSVTSPTEPAVTSPVTPVPTSGQPAVGSSTTQPDGQQTGPASSPTVTPTLPTPTLGVLTP CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCEECCCCCCCCCCCCCC TSLAFAEAQPTVPPTAAALAGSSSTPSIGVTPSAPVADSHPTGPPWGALLFTSLAAIVLL CHHEECCCCCCCCCHHHHHCCCCCCCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHH AYSFARWRRRSP HHHHHHHHCCCC
PDB accession: NA
Resolution: NA
Structure class: Alpha Beta
Cofactors: NA
Metal ions: NA
Kcat value (1/min): NA
Specific activity: NA
Km value (mM): NA
Substrates: NA
Specific reaction: NA
General reaction: NA
Inhibitor: NA
Structure determination priority: 10.0
TargetDB status: NA
Availability: NA
References: NA