Click here to switch to the map view.

The map label for this gene is ydfH [H]

Identifier: 221632163

GI number: 221632163

Start: 135215

End: 135898

Strand: Reverse

Name: ydfH [H]

Synonym: trd_0129

Alternate gene names: 221632163

Gene position: 135898-135215 (Counterclockwise)

Preceding gene: 221632164

Following gene: 221632161

Centisome position: 6.78

GC content: 58.33

Gene sequence:

>684_bases
ATGCCTGCTGGTCTCGGGAACTCCCGGGGACATCGGCAACTCTTGCACCAACAAGCGTACGAAGTGATCCGGAACGCTAT
CGTCCAGAGCGACTTGCCTCCGGGATCGGTTGTCTCCGAACGAACGCTCTCCGAGCAGTTCGGTTTCGGGCGAGCCCCGA
TCCGAGCCGCAATACAACGGCTCGCTGCTGAAGGATTTCTGCTGATCGTGCCGCAACAGGGAATTATCGTCGCGAGCCCC
TCCCTCGAAGAGGTCCGAGACCTCTTCGAGTTGCGCGTTGCACTGGAGTCATACGTCGTCCGTCGCTTAGCTCTGGAACC
TCAGGAGGTGGATTTCGTCCACCTCGAGCTGTTACTGGAGAAACAGGAAAAAGCCGCGCAGGAACAAAACGTCCGACTCT
ACCGACAACTCGATGTGGATTTCCACCTTTTCCTGGCGCACTCGCTCGGGAACAGCGAACTGTACTCCTCGATGGAGCGC
TTGAGCGATCGACTCCATCGCATCATCGCGTCTGTCATTTCGAGACGCCCTGCCCGGATGCTCGACAGTACGATCGAGCA
TCGAGCGATTGTCCAGGCCATCGCCACGGGCGATCCGGATGCAGCGGAAATGGCTATGATCACCCACCTCGACTGGGCTT
GGAATTTTCTCACAGGAGGCCATCTCCCTCGTCACGGCCGTTAA

Upstream 100 bases:

>100_bases
GACGATGATCAGCTACACGAATGCGTGCAAATCATCTTGGAGAGTTGATGCCACGATCCAAGTTTCCTAATCAATGCTTA
ACAGTTACTGGAGGAATTCA

Downstream 100 bases:

>100_bases
CCTCTCACGCGGCTCTATTTTCGTAAACGACACTCCTGCCACGACAGCTTGTACTGATCCTACTCACATCCCTTTTCTCT
TCTTCTTGTCTGCTGCGCTC

Product: GntR-family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 227; Mature: 226

Protein sequence:

>227_residues
MPAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQRLAAEGFLLIVPQQGIIVASP
SLEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLEKQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMER
LSDRLHRIIASVISRRPARMLDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR

Sequences:

>Translated_227_residues
MPAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQRLAAEGFLLIVPQQGIIVASP
SLEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLEKQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMER
LSDRLHRIIASVISRRPARMLDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR
>Mature_226_residues
PAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQRLAAEGFLLIVPQQGIIVASPS
LEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLEKQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMERL
SDRLHRIIASVISRRPARMLDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR

Specific function: Unknown

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1787821, Length=199, Percent_Identity=32.1608040201005, Blast_Score=86, Evalue=1e-18,

Paralogues:

None

Copy number: 10-20 Molecules/Cell [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011711
- InterPro:   IPR000524
- InterPro:   IPR011991 [H]

Pfam domain/function: PF07729 FCD; PF00392 GntR [H]

EC number: NA

Molecular weight: Translated: 25592; Mature: 25461

Theoretical pI: Translated: 6.69; Mature: 6.69

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.2 %Met     (Translated Protein)
2.2 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.8 %Met     (Mature Protein)
1.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQR
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LAAEGFLLIVPQQGIIVASPSLEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLE
HHHCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMERLSDRLHRIIASVISRRPARM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure 
PAGLGNSRGHRQLLHQQAYEVIRNAIVQSDLPPGSVVSERTLSEQFGFGRAPIRAAIQR
CCCCCCCHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHCCCCCHHHHHHHH
LAAEGFLLIVPQQGIIVASPSLEEVRDLFELRVALESYVVRRLALEPQEVDFVHLELLLE
HHHCCEEEEECCCCEEEECCCHHHHHHHHHHHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
KQEKAAQEQNVRLYRQLDVDFHLFLAHSLGNSELYSSMERLSDRLHRIIASVISRRPARM
HHHHHHHHHHHHHHHHHCCCHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCCCHHH
LDSTIEHRAIVQAIATGDPDAAEMAMITHLDWAWNFLTGGHLPRHGR
HHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11206551; 11258796 [H]