Click here to switch to the map view.

The map label for this gene is ytcP [H]

Identifier: 221232534

GI number: 221232534

Start: 1756434

End: 1757324

Strand: Reverse

Name: ytcP [H]

Synonym: SPN23F_18080

Alternate gene names: 221232534

Gene position: 1757324-1756434 (Counterclockwise)

Preceding gene: 221232535

Following gene: 221232533

Centisome position: 79.11

GC content: 36.48

Gene sequence:

>891_bases
ATGAAAAATTCGATTATGGATACAAAATTTGATAGACGTATCTTACTCTTAAATAAAATCATTATTGTCTTTATCGTTTT
GATGACTTTGCTTCCTTTACTTTATATCGTCGTAGCATCCTTTATGGATCCTAAGGTTCTGGTTAGTAGAGGGATTAGCT
TTAATCCAGCCGATTGGACTGTAGAAGGTTACCAGCGTGTATTCAGTGACCAATCTATTCTAAGAGGTTTTATCAATTCT
CTACTATACTCTTTTGGATTTGCAGCTTTAACAGTATTGCTATCTGTGTTTACAGCTTATCCTCTTTCTAAGAAAGACTT
GGTTGGACGTCGTTGGATTAACTACTTCTTGATTGTGACTATGTTCTTTGGTGGTGGTTTAGTCCCAACTTACTTGCTCG
TAAAAGAATTGGGAATGCTCAATACTCCATGGGCTATCATTGTTCCAGGTGCTGTCAATGTTTGGAATATTATTCTTGCT
AGGGCCTATTTCCAAGGATTGCCTGAAGAATTAGTTGAAGCTGCTGTCATTGATGGAGCGAATGACTTGCAGATTTTCTT
TAAAATCATGCTTCCTCTTGCAAAACCAATTATGTTTGTTCTCTTCCTCTATGCTTTTGTAGGACAGTGGAACTCATACT
TTGATGCAATGATTTATATCAAGGATCCAAACTTGGAACCATTGCAACTTGTACTTCGTAAAATTCTCATTCAGAGCCAA
CCAGGTCAAGACATGATTGGAGCACAAGCGGCTATGAATGAAATGAAACGTTTAGCTGAATTGATTAAATACGCAACTAT
TGTCATTTCCAGCTTGCCATTGATTGTTATGTATCCATTCTTCCAAAAATACTTTGATAAAGGAATTATGGCTGGTTCAC
TTAAAGGATAA

Upstream 100 bases:

>100_bases
GTTGGTTTGTTTAATGCAGTGATTAACGTAGTATTGCTTGTTGCAGTTAACCAAATCGTTAAACGCATGAATAATGGTGA
AGGAATTTAAGGAGGAAAGT

Downstream 100 bases:

>100_bases
AAAAAGAAAAAATAAAAGGAGTTTTCTCATGAAATTCAAAACATTCTCAAAATCAGCAGTTTTGTTGACAGCTAGTTTAG
CAGTACTTGCAGCCTGTGGC

Product: binding-protein-dependent transport system membrane protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 296; Mature: 296

Protein sequence:

>296_residues
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINS
LLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILA
RAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ
PGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG

Sequences:

>Translated_296_residues
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINS
LLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILA
RAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ
PGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG
>Mature_296_residues
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWTVEGYQRVFSDQSILRGFINS
LLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVTMFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILA
RAYFQGLPEELVEAAVIDGANDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ
PGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG

Specific function: Probably part of a binding-protein-dependent transport system. Probably responsible for the translocation of the substrate across the membrane [H]

COG id: COG0395

COG function: function code G; ABC-type sugar transport system, permease component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787571, Length=277, Percent_Identity=28.8808664259928, Blast_Score=102, Evalue=3e-23,
Organism=Escherichia coli, GI1789860, Length=226, Percent_Identity=24.7787610619469, Blast_Score=69, Evalue=4e-13,
Organism=Escherichia coli, GI1790464, Length=217, Percent_Identity=27.1889400921659, Blast_Score=61, Evalue=9e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 33557; Mature: 33557

Theoretical pI: Translated: 9.72; Mature: 9.72

Prosite motif: PS50928 ABC_TM1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.7 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.7 %Met     (Mature Protein)
4.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCH
VEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
MFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGA
HHHCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
NDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCC
PGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC
>Mature Secondary Structure
MKNSIMDTKFDRRILLLNKIIIVFIVLMTLLPLLYIVVASFMDPKVLVSRGISFNPADWT
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHCCCCCCCCCCH
VEGYQRVFSDQSILRGFINSLLYSFGFAALTVLLSVFTAYPLSKKDLVGRRWINYFLIVT
HHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHH
MFFGGGLVPTYLLVKELGMLNTPWAIIVPGAVNVWNIILARAYFQGLPEELVEAAVIDGA
HHHCCCHHHHHHHHHHHCCCCCCCEEEECCHHHHHHHHHHHHHHHCCCHHHHHHHHHCCC
NDLQIFFKIMLPLAKPIMFVLFLYAFVGQWNSYFDAMIYIKDPNLEPLQLVLRKILIQSQ
HHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHEEEEEECCCCCHHHHHHHHHHHCCC
PGQDMIGAQAAMNEMKRLAELIKYATIVISSLPLIVMYPFFQKYFDKGIMAGSLKG
CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 9387221; 9384377; 8763940 [H]