Click here to switch to the map view.

The map label for this gene is yidA [H]

Identifier: 221231939

GI number: 221231939

Start: 1114349

End: 1115167

Strand: Reverse

Name: yidA [H]

Synonym: SPN23F_11400

Alternate gene names: 221231939

Gene position: 1115167-1114349 (Counterclockwise)

Preceding gene: 221231940

Following gene: 221231938

Centisome position: 50.2

GC content: 42.49

Gene sequence:

>819_bases
ATGGCAGATATAAAATTAATCGCATTGGACTTGGACGGGACCTTGCTGACTACTGATAAAAGGCTGACGGATCGTACCAA
GGAAACCTTGAAAGCTGCGCGTGATCGTGGTATCAAGGTCGTATTGACAACTGGTCGTCCCTTAAAAGCTATGGATTTCT
TTCTCCATGAGCTAGGGACTGACGGTCAGGAAGATGAGTATACCATTACTTTTAATGGTGGTTTGGTTCAGAAAAATACA
GGTGAAATCCTTGATAAGACAGTCTTTTCATATGATGATGTGGCACGCTTGTATGAAGAAACAGAGAAATTATCACTGCC
TCTTGACGCTATCTCAGAAGGAACTGTTTATCAAATCCAATCGGACCAAGAAAGTCTTTATGCCAAATTCAATCCAGCTT
TGACTTTTGTTCCAGTTGACTTTGAAGACCTGTCTAGTCAAATGACCTACAACAAATGCGTGACTGCCTTTGCTCAAGAA
CCCTTGGATGCAGCCATTCAGAAGATTTCTCCAGAATTGTTTGACCAATATGAAATCTTTAAATCACGTGAAATGTTGCT
AGAGTGGTCACCAAAGAATGTTCATAAAGCAACAGGTTTGGCAAAACTAATCAGCCATCTCGGAATCAACCAAAGCCAAG
TTATGGCCTGTGGTGACGAGGCCAATGACCTTTCTATGATTGAATGGGCAGGTCTTGGTGTTGCTATGCAAAACGCTGTT
CCTGAAGTAAAGGCAGCCGCAAATGTAGTAATGCCGATGACCAACGATGAGGAAGCTGTCGCCTGGGCTATCGAAGAATA
TGTGCTAAAGGAGAACTAA

Upstream 100 bases:

>100_bases
TAGCTCCTGAAAATGCACGACCTGAAATTTTAGAATTAGCAAAGACTGTGATTGGTCACCATAAGGACCAGTCGGTTATA
GCTTATATGGAGGGCTTATA

Downstream 100 bases:

>100_bases
GATATGGGATTGTTTGACCGTCTATTCGGAAAAAAAGAAGAACCTAAAATCGAAGAAGTTGTAAAAGAAGCTCTGGAAAA
TCTTGATTTGTCTGAAGATG

Product: haloacid dehalogenase-like hydrolase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 272; Mature: 271

Protein sequence:

>272_residues
MADIKLIALDLDGTLLTTDKRLTDRTKETLKAARDRGIKVVLTTGRPLKAMDFFLHELGTDGQEDEYTITFNGGLVQKNT
GEILDKTVFSYDDVARLYEETEKLSLPLDAISEGTVYQIQSDQESLYAKFNPALTFVPVDFEDLSSQMTYNKCVTAFAQE
PLDAAIQKISPELFDQYEIFKSREMLLEWSPKNVHKATGLAKLISHLGINQSQVMACGDEANDLSMIEWAGLGVAMQNAV
PEVKAAANVVMPMTNDEEAVAWAIEEYVLKEN

Sequences:

>Translated_272_residues
MADIKLIALDLDGTLLTTDKRLTDRTKETLKAARDRGIKVVLTTGRPLKAMDFFLHELGTDGQEDEYTITFNGGLVQKNT
GEILDKTVFSYDDVARLYEETEKLSLPLDAISEGTVYQIQSDQESLYAKFNPALTFVPVDFEDLSSQMTYNKCVTAFAQE
PLDAAIQKISPELFDQYEIFKSREMLLEWSPKNVHKATGLAKLISHLGINQSQVMACGDEANDLSMIEWAGLGVAMQNAV
PEVKAAANVVMPMTNDEEAVAWAIEEYVLKEN
>Mature_271_residues
ADIKLIALDLDGTLLTTDKRLTDRTKETLKAARDRGIKVVLTTGRPLKAMDFFLHELGTDGQEDEYTITFNGGLVQKNTG
EILDKTVFSYDDVARLYEETEKLSLPLDAISEGTVYQIQSDQESLYAKFNPALTFVPVDFEDLSSQMTYNKCVTAFAQEP
LDAAIQKISPELFDQYEIFKSREMLLEWSPKNVHKATGLAKLISHLGINQSQVMACGDEANDLSMIEWAGLGVAMQNAVP
EVKAAANVVMPMTNDEEAVAWAIEEYVLKEN

Specific function: Catalyzes the dephosphorylation of the artificial chromogenic substrate p-nitrophenyl phosphate (pNPP) and of the natural substrates erythrose 4-phosphate and mannose 1-phosphate [H]

COG id: COG0561

COG function: function code R; Predicted hydrolases of the HAD superfamily

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the HAD-like hydrolase superfamily. Cof family [H]

Homologues:

Organism=Escherichia coli, GI2367265, Length=269, Percent_Identity=39.7769516728625, Blast_Score=178, Evalue=3e-46,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005834
- InterPro:   IPR023214
- InterPro:   IPR006379
- InterPro:   IPR000150 [H]

Pfam domain/function: PF00702 Hydrolase [H]

EC number: NA

Molecular weight: Translated: 30300; Mature: 30168

Theoretical pI: Translated: 4.23; Mature: 4.23

Prosite motif: PS01228 COF_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.7 %Cys     (Translated Protein)
3.3 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
0.7 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MADIKLIALDLDGTLLTTDKRLTDRTKETLKAARDRGIKVVLTTGRPLKAMDFFLHELGT
CCCEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCC
DGQEDEYTITFNGGLVQKNTGEILDKTVFSYDDVARLYEETEKLSLPLDAISEGTVYQIQ
CCCCCCEEEEECCCEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEE
SDQESLYAKFNPALTFVPVDFEDLSSQMTYNKCVTAFAQEPLDAAIQKISPELFDQYEIF
CCCHHHHEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHH
KSREMLLEWSPKNVHKATGLAKLISHLGINQSQVMACGDEANDLSMIEWAGLGVAMQNAV
HHHHHHEECCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEHHCCCHHHHHCC
PEVKAAANVVMPMTNDEEAVAWAIEEYVLKEN
CHHHHHCCEEEECCCCCHHHHHHHHHHHHCCC
>Mature Secondary Structure 
ADIKLIALDLDGTLLTTDKRLTDRTKETLKAARDRGIKVVLTTGRPLKAMDFFLHELGT
CCEEEEEEECCCEEEECCHHHHHHHHHHHHHHHHCCEEEEEECCCCHHHHHHHHHHHCC
DGQEDEYTITFNGGLVQKNTGEILDKTVFSYDDVARLYEETEKLSLPLDAISEGTVYQIQ
CCCCCCEEEEECCCEEECCCHHHHHHHHHCHHHHHHHHHHHHHHCCCHHHCCCCCEEEEE
SDQESLYAKFNPALTFVPVDFEDLSSQMTYNKCVTAFAQEPLDAAIQKISPELFDQYEIF
CCCHHHHEEECCCEEEEECCHHHHHHHHHHHHHHHHHHHCHHHHHHHHHCHHHHHHHHHH
KSREMLLEWSPKNVHKATGLAKLISHLGINQSQVMACGDEANDLSMIEWAGLGVAMQNAV
HHHHHHEECCCCHHHHHHHHHHHHHHHCCCHHHEEEECCCCCCCCEEEHHCCCHHHHHCC
PEVKAAANVVMPMTNDEEAVAWAIEEYVLKEN
CHHHHHCCEEEECCCCCHHHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 12471157 [H]