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The map label for this gene is ycjO [C]

Identifier: 220932918

GI number: 220932918

Start: 2259251

End: 2260324

Strand: Reverse

Name: ycjO [C]

Synonym: Hore_20860

Alternate gene names: 220932918

Gene position: 2260324-2259251 (Counterclockwise)

Preceding gene: 220932919

Following gene: 220932917

Centisome position: 87.67

GC content: 41.34

Gene sequence:

>1074_bases
ATGGCTAAATATGGCAGTTCAAGCCTGGCTAAAAAAGAGCAGCAGCTTGCCTATAAACTGCTGTTACCTGCTTTTATAAT
CTTGATTTTAATTGCTTTTTATCCTCTAGGCCAGGTTTTTTATACCAGCTTAACTGATAAAACCTTTGCCACTACCAAAG
AAACTCATTTTATCGGGCTTGAAAATTATAAAGAACTCCTCGGTATTACCATCAAGGAACTTAAACCAATAATTGATGAA
GAAACAGGAGAACAGAAAATTGACCCCAGGACCGGTAAACCCCAGTATCAGAGACCAATCAGGGTTTTACCGAGACGACC
AAGGCTATACCGTCCCCTGAGCCAGTTTCAGATTTTTGGAAAACGTTTTGTCATTGGAGCAAGCAATCCTGATTTTATCA
GCTCTATCTGGAATACCCTGGTCTTTACAGTTTTATCGGTATTACTGGAAACAATTCTGGGACTTGGTATTGCCCTGGTG
GTTAACAGTAAATTTAAGGGACGTGGTGTTGTTAGAGCTGTTATGCTCGTGCCGTGGGCGGTAATTACAGTTGTGTCTGC
CCGGATGTGGCAGTGGATGCTGGAGCCCACCCGGATCGGTCTTTTTAATACTGTTTTCGATAAACTAGGTATAGGTGATG
GGAATATCGCTTTTCTGTCAACACCGGAATTACAGTTACCTTCTTTAATAATGGTTGATGTCTGGAAAACCACTCCTTTT
ATGGCCCTGCTTCTTCTGGCCGGGTTACAGCTGATACCTGATGAATTATATGAAGCAGCTGATGTTGATGGGGCCAGTAA
ATTACGGCAGTTTTTCTCAATTACGTTACCCTTATTAAAACCGTCTCTGGCAGTAGCACTTGTCTTCCGGACTCTGGATG
CTTTAAGGGTATTTGATATATTTCAGGTTATCCTGGCCCAGAAAAGATATTCAATGGCCAGTTTTAATTACTATCAGTTA
ATAAATGCCCGTAATATGGGACTGGCATCTGCCATCGGGGTAATAATTTTTATCCTGATCTTTATCTTTGCTATTGTCTA
CATCAGGATGCTAGGAGTTGATGCTGATGACTAA

Upstream 100 bases:

>100_bases
GTGAACCTCAAAAATAAAAAGAGATGCATTTAGACACAATAGTGAATTCAGGGGCCTCTTAAAAGGGGCCCCCCTACTTG
CTATATAAAGGAGGTATACT

Downstream 100 bases:

>100_bases
ACTAAAAAATCTATCACTTAAGAAGGTAGTATTTTATCTGGTTTTGACTGTGGTAATTTTCTATCTGCTTTTCCCTTTTT
ACTGGGCTGTTAATACTTCT

Product: binding-protein-dependent transport systems inner membrane component

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 357; Mature: 356

Protein sequence:

>357_residues
MAKYGSSSLAKKEQQLAYKLLLPAFIILILIAFYPLGQVFYTSLTDKTFATTKETHFIGLENYKELLGITIKELKPIIDE
ETGEQKIDPRTGKPQYQRPIRVLPRRPRLYRPLSQFQIFGKRFVIGASNPDFISSIWNTLVFTVLSVLLETILGLGIALV
VNSKFKGRGVVRAVMLVPWAVITVVSARMWQWMLEPTRIGLFNTVFDKLGIGDGNIAFLSTPELQLPSLIMVDVWKTTPF
MALLLLAGLQLIPDELYEAADVDGASKLRQFFSITLPLLKPSLAVALVFRTLDALRVFDIFQVILAQKRYSMASFNYYQL
INARNMGLASAIGVIIFILIFIFAIVYIRMLGVDADD

Sequences:

>Translated_357_residues
MAKYGSSSLAKKEQQLAYKLLLPAFIILILIAFYPLGQVFYTSLTDKTFATTKETHFIGLENYKELLGITIKELKPIIDE
ETGEQKIDPRTGKPQYQRPIRVLPRRPRLYRPLSQFQIFGKRFVIGASNPDFISSIWNTLVFTVLSVLLETILGLGIALV
VNSKFKGRGVVRAVMLVPWAVITVVSARMWQWMLEPTRIGLFNTVFDKLGIGDGNIAFLSTPELQLPSLIMVDVWKTTPF
MALLLLAGLQLIPDELYEAADVDGASKLRQFFSITLPLLKPSLAVALVFRTLDALRVFDIFQVILAQKRYSMASFNYYQL
INARNMGLASAIGVIIFILIFIFAIVYIRMLGVDADD
>Mature_356_residues
AKYGSSSLAKKEQQLAYKLLLPAFIILILIAFYPLGQVFYTSLTDKTFATTKETHFIGLENYKELLGITIKELKPIIDEE
TGEQKIDPRTGKPQYQRPIRVLPRRPRLYRPLSQFQIFGKRFVIGASNPDFISSIWNTLVFTVLSVLLETILGLGIALVV
NSKFKGRGVVRAVMLVPWAVITVVSARMWQWMLEPTRIGLFNTVFDKLGIGDGNIAFLSTPELQLPSLIMVDVWKTTPFM
ALLLLAGLQLIPDELYEAADVDGASKLRQFFSITLPLLKPSLAVALVFRTLDALRVFDIFQVILAQKRYSMASFNYYQLI
NARNMGLASAIGVIIFILIFIFAIVYIRMLGVDADD

Specific function: Probably part of an ABC transporter complex. Probably responsible for the translocation of the substrate across the membrane (Probable) [H]

COG id: NA

COG function: NA

Gene ontology:

Cell location: Cell inner membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 ABC transmembrane type-1 domain [H]

Homologues:

Organism=Escherichia coli, GI1787570, Length=216, Percent_Identity=29.1666666666667, Blast_Score=94, Evalue=1e-20,
Organism=Escherichia coli, GI1790465, Length=235, Percent_Identity=28.5106382978723, Blast_Score=87, Evalue=2e-18,
Organism=Escherichia coli, GI1789861, Length=183, Percent_Identity=32.2404371584699, Blast_Score=74, Evalue=1e-14,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000515 [H]

Pfam domain/function: PF00528 BPD_transp_1 [H]

EC number: NA

Molecular weight: Translated: 40209; Mature: 40078

Theoretical pI: Translated: 10.01; Mature: 10.01

Prosite motif: PS50928 ABC_TM1 ; PS00678 WD_REPEATS_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
2.5 %Met     (Translated Protein)
2.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.2 %Met     (Mature Protein)
2.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAKYGSSSLAKKEQQLAYKLLLPAFIILILIAFYPLGQVFYTSLTDKTFATTKETHFIGL
CCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECH
ENYKELLGITIKELKPIIDEETGEQKIDPRTGKPQYQRPIRVLPRRPRLYRPLSQFQIFG
HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCHHHHHHHH
KRFVIGASNPDFISSIWNTLVFTVLSVLLETILGLGIALVVNSKFKGRGVVRAVMLVPWA
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHH
VITVVSARMWQWMLEPTRIGLFNTVFDKLGIGDGNIAFLSTPELQLPSLIMVDVWKTTPF
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEHHHCCHH
MALLLLAGLQLIPDELYEAADVDGASKLRQFFSITLPLLKPSLAVALVFRTLDALRVFDI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQVILAQKRYSMASFNYYQLINARNMGLASAIGVIIFILIFIFAIVYIRMLGVDADD
HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC
>Mature Secondary Structure 
AKYGSSSLAKKEQQLAYKLLLPAFIILILIAFYPLGQVFYTSLTDKTFATTKETHFIGL
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHCCCCCEEECH
ENYKELLGITIKELKPIIDEETGEQKIDPRTGKPQYQRPIRVLPRRPRLYRPLSQFQIFG
HHHHHHHCCCHHHHHHHHCCCCCCCCCCCCCCCCCCCCCHHHCCCCCHHHCCHHHHHHHH
KRFVIGASNPDFISSIWNTLVFTVLSVLLETILGLGIALVVNSKFKGRGVVRAVMLVPWA
CEEEEECCCCHHHHHHHHHHHHHHHHHHHHHHHHCHHHEEECCCCCCCHHHHHHHHHHHH
VITVVSARMWQWMLEPTRIGLFNTVFDKLGIGDGNIAFLSTPELQLPSLIMVDVWKTTPF
HHHHHHHHHHHHHHCHHHHHHHHHHHHHHCCCCCCEEEEECCCCCCCCCCEEEHHHCCHH
MALLLLAGLQLIPDELYEAADVDGASKLRQFFSITLPLLKPSLAVALVFRTLDALRVFDI
HHHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
FQVILAQKRYSMASFNYYQLINARNMGLASAIGVIIFILIFIFAIVYIRMLGVDADD
HHHHHHHHHHHHHCCCHHHHHCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 6.0

TargetDB status: NA

Availability: NA

References: NA