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The map label for this gene is ywrC [H]

Identifier: 220932745

GI number: 220932745

Start: 2043275

End: 2043742

Strand: Reverse

Name: ywrC [H]

Synonym: Hore_19100

Alternate gene names: 220932745

Gene position: 2043742-2043275 (Counterclockwise)

Preceding gene: 220932746

Following gene: 220932744

Centisome position: 79.27

GC content: 34.83

Gene sequence:

>468_bases
TTGGATGAGCTGGATTACAAATTGCTGGATGACCTGTCGAAAAACAGTCGAGTAAGTTATGCAGAACTGGAACGCAAATA
TAATTTAAGCCGTGTCTGTATCAGGGAAAGGATTAATAATCTGGTGGATGAAGGGGTTATTGAAAATTTTACAATTAATA
TTAATCCTGAAAAACTGGGGATGAGGCTTGAGGCTTTTTTTGAACTGGATGTTAAGCCCAACTACCTCTATAAGGTAGCC
CGGGAGCTGTCTGAAGAAGATGATGTTGTTCATATCTTTTTAATGACCGGGTCTGCTACCCTTCATATGTATGTGGTATT
AAAGGATAAATGCAGTCTCGAGGATTTTTTAAGGGAAAAATTATATAACAGGGAAGAAATAATCGGTGTAGATTGCAAAA
TTATATTGAAAAAATTTAAAAGTTCTAATAATATTTTAAGTAAGCTCTGTGAAGAGAAATCTGATTAA

Upstream 100 bases:

>100_bases
ATCGACAAGAGGTATTTAGAAGAATTTGTGAAAAAAATAATTAACTTATCAGATTTTATTGACCTGGAAATAGATAAAGT
ATAGAAAGGGGTGCAGTAAA

Downstream 100 bases:

>100_bases
GGTTACTGGATAGGGGTGATGGTAATGAACAGTGAGGTAATTATGGACAAAGGCCCGGAAAAATCAGGTTCAAAAAGTTA
TTTTATCTTAAATGAAATTC

Product: putative AsnC family transcriptional regulator

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 155; Mature: 155

Protein sequence:

>155_residues
MDELDYKLLDDLSKNSRVSYAELERKYNLSRVCIRERINNLVDEGVIENFTININPEKLGMRLEAFFELDVKPNYLYKVA
RELSEEDDVVHIFLMTGSATLHMYVVLKDKCSLEDFLREKLYNREEIIGVDCKIILKKFKSSNNILSKLCEEKSD

Sequences:

>Translated_155_residues
MDELDYKLLDDLSKNSRVSYAELERKYNLSRVCIRERINNLVDEGVIENFTININPEKLGMRLEAFFELDVKPNYLYKVA
RELSEEDDVVHIFLMTGSATLHMYVVLKDKCSLEDFLREKLYNREEIIGVDCKIILKKFKSSNNILSKLCEEKSD
>Mature_155_residues
MDELDYKLLDDLSKNSRVSYAELERKYNLSRVCIRERINNLVDEGVIENFTININPEKLGMRLEAFFELDVKPNYLYKVA
RELSEEDDVVHIFLMTGSATLHMYVVLKDKCSLEDFLREKLYNREEIIGVDCKIILKKFKSSNNILSKLCEEKSD

Specific function: Activator Of Asna Transcription; Autogenous Regulator Of Its Own Transcription; And Repressor Of The Expression Of Gida At A Post-Transcriptional Level. [C]

COG id: COG1522

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH asnC-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790182, Length=138, Percent_Identity=26.8115942028986, Blast_Score=61, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011008
- InterPro:   IPR000485
- InterPro:   IPR013199
- InterPro:   IPR019888
- InterPro:   IPR019887
- InterPro:   IPR011991 [H]

Pfam domain/function: PF01037 AsnC_trans_reg; PF08280 HTH_Mga [H]

EC number: NA

Molecular weight: Translated: 18223; Mature: 18223

Theoretical pI: Translated: 4.84; Mature: 4.84

Prosite motif: PS50956 HTH_ASNC_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
2.6 %Met     (Translated Protein)
5.2 %Cys+Met (Translated Protein)
2.6 %Cys     (Mature Protein)
2.6 %Met     (Mature Protein)
5.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDELDYKLLDDLSKNSRVSYAELERKYNLSRVCIRERINNLVDEGVIENFTININPEKLG
CCCCHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
MRLEAFFELDVKPNYLYKVARELSEEDDVVHIFLMTGSATLHMYVVLKDKCSLEDFLREK
HHEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCHHHHHHHH
LYNREEIIGVDCKIILKKFKSSNNILSKLCEEKSD
HCCHHHEECCHHHHHHHHHCCCCHHHHHHHHCCCC
>Mature Secondary Structure
MDELDYKLLDDLSKNSRVSYAELERKYNLSRVCIRERINNLVDEGVIENFTININPEKLG
CCCCHHHHHHHCCCCCCCHHHHHHHHCCHHHHHHHHHHHHHHHCCCCCCEEEEECHHHHH
MRLEAFFELDVKPNYLYKVARELSEEDDVVHIFLMTGSATLHMYVVLKDKCSLEDFLREK
HHEEEEEEECCCCHHHHHHHHHCCCCCCEEEEEEEECCCEEEEEEEECCCCCHHHHHHHH
LYNREEIIGVDCKIILKKFKSSNNILSKLCEEKSD
HCCHHHEECCHHHHHHHHHCCCCHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9353933; 9384377 [H]