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The map label for this gene is kdsD [H]

Identifier: 220932726

GI number: 220932726

Start: 2021197

End: 2022192

Strand: Reverse

Name: kdsD [H]

Synonym: Hore_18910

Alternate gene names: 220932726

Gene position: 2022192-2021197 (Counterclockwise)

Preceding gene: 220932727

Following gene: 220932725

Centisome position: 78.44

GC content: 48.39

Gene sequence:

>996_bases
GTGAATGAACCGGTAAACCTCGATGAAAAGATGATAATTGACTGTCTTCAGGAAGCCCGTAAAGTCCTTGAGATAGAGGC
CTATTCGGTTTTAAAACTCAAAGACAGTATCGGTAGTGAATTTGCTGATATTGTCAGGGTTATTCTGGAGAGCAAGGGTC
GGGTTATTTTTACCGGTATCGGAAAATCCGGCCTTATCGGACAGAAACTGGCCGCTACCTTTTCCAGTACCGGGACACCT
GCTTTTTTTGTACATGCCGGTGAGGCCCTGCATGGTGACCTGGGAATGGTAACCGGAGATGATATAATAATTGCCATTTC
CAACAGCGGGGAGACGGAAGAGGTTTTAAGTCTTGTGCCCTCCATCAGGAGGATCGGAGCCTTTTTGATAGCTGTTACCG
GGAATAGGTCTTCTACTCTGGCCCGTTATGCCAACAATCACTTATTAGTCAATATTGAGGAAGAGGCCTGTCCCCATGGC
CTGGCCCCGACAGCCAGTACTACGGCTACTCTAGCCCTGGGTGATGCCCTGGCTATTGCTTTATCAAAGCTAAAGGGTTT
TACCCCCGAGGATTTTGCCCTCTTTCACCCCGGTGGAAGCCTGGGAAGGAAGTTATTGACAAAGGTAGAAGATGTCCTCC
AGGTTAGAAAACAAAACCCGGTTGTTCAGTCCGGGACAAGTGTCAAAGAAGCCCTCTTTACCATGACTGCCAGTAAAATG
GGTTCTACTTCAGTAGTGGATGAAAGGGGGCGGCTGGTCGGGATAATCACTGATGGAGATATCAGGCGCCTTTTAGAGGA
GTCGACCGACTTTCTCCAGAAACCGGTATTAGAGGTAATGACAAAAGACCCTATTACCATTGAAAAAGACCGGCTGGCCG
CTGAAGCCCTGAAAATTATGGAGGATAAGGAAGTTAATGACCTGCCGGTAGTCGAAGATGGGAAGCCAGTGGGAATGCTT
AACTTCCAGGACCTGTTAAGGGCCCGGGTCTTTTAG

Upstream 100 bases:

>100_bases
TTTAAGTGATGGTCCCAACATGGTTCCCCTTGACCAGCTTGAGGGAATCCTGATAAAAGCCCTGGCCATTGACGAAATTG
TTAAAGGCAGGTGAAGATAA

Downstream 100 bases:

>100_bases
GGAAAAGATGGGGTGGATATGGTGAAGAATATTATACTCTATTTGGTCTTTGAAGGTTTTTTACTATTTATCAGAATATT
ACCCGGTTTTTTACGCCAGA

Product: KpsF/GutQ family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 331; Mature: 331

Protein sequence:

>331_residues
MNEPVNLDEKMIIDCLQEARKVLEIEAYSVLKLKDSIGSEFADIVRVILESKGRVIFTGIGKSGLIGQKLAATFSSTGTP
AFFVHAGEALHGDLGMVTGDDIIIAISNSGETEEVLSLVPSIRRIGAFLIAVTGNRSSTLARYANNHLLVNIEEEACPHG
LAPTASTTATLALGDALAIALSKLKGFTPEDFALFHPGGSLGRKLLTKVEDVLQVRKQNPVVQSGTSVKEALFTMTASKM
GSTSVVDERGRLVGIITDGDIRRLLEESTDFLQKPVLEVMTKDPITIEKDRLAAEALKIMEDKEVNDLPVVEDGKPVGML
NFQDLLRARVF

Sequences:

>Translated_331_residues
MNEPVNLDEKMIIDCLQEARKVLEIEAYSVLKLKDSIGSEFADIVRVILESKGRVIFTGIGKSGLIGQKLAATFSSTGTP
AFFVHAGEALHGDLGMVTGDDIIIAISNSGETEEVLSLVPSIRRIGAFLIAVTGNRSSTLARYANNHLLVNIEEEACPHG
LAPTASTTATLALGDALAIALSKLKGFTPEDFALFHPGGSLGRKLLTKVEDVLQVRKQNPVVQSGTSVKEALFTMTASKM
GSTSVVDERGRLVGIITDGDIRRLLEESTDFLQKPVLEVMTKDPITIEKDRLAAEALKIMEDKEVNDLPVVEDGKPVGML
NFQDLLRARVF
>Mature_331_residues
MNEPVNLDEKMIIDCLQEARKVLEIEAYSVLKLKDSIGSEFADIVRVILESKGRVIFTGIGKSGLIGQKLAATFSSTGTP
AFFVHAGEALHGDLGMVTGDDIIIAISNSGETEEVLSLVPSIRRIGAFLIAVTGNRSSTLARYANNHLLVNIEEEACPHG
LAPTASTTATLALGDALAIALSKLKGFTPEDFALFHPGGSLGRKLLTKVEDVLQVRKQNPVVQSGTSVKEALFTMTASKM
GSTSVVDERGRLVGIITDGDIRRLLEESTDFLQKPVLEVMTKDPITIEKDRLAAEALKIMEDKEVNDLPVVEDGKPVGML
NFQDLLRARVF

Specific function: Catalyzes the interconversion of D-arabinose 5-phosphate and D-ribulose 5-phosphate [H]

COG id: COG0794

COG function: function code M; Predicted sugar phosphate isomerase involved in capsule formation

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 SIS domain [H]

Homologues:

Organism=Escherichia coli, GI1789588, Length=317, Percent_Identity=47.0031545741325, Blast_Score=295, Evalue=3e-81,
Organism=Escherichia coli, GI87082151, Length=317, Percent_Identity=40.3785488958991, Blast_Score=233, Evalue=1e-62,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000644
- InterPro:   IPR004800
- InterPro:   IPR001347 [H]

Pfam domain/function: PF00571 CBS; PF01380 SIS [H]

EC number: =5.3.1.13 [H]

Molecular weight: Translated: 35700; Mature: 35700

Theoretical pI: Translated: 4.93; Mature: 4.93

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.6 %Cys     (Translated Protein)
2.4 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
0.6 %Cys     (Mature Protein)
2.4 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNEPVNLDEKMIIDCLQEARKVLEIEAYSVLKLKDSIGSEFADIVRVILESKGRVIFTGI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCHHHHHHHHHHHHCCCCEEEEEC
GKSGLIGQKLAATFSSTGTPAFFVHAGEALHGDLGMVTGDDIIIAISNSGETEEVLSLVP
CCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEECCCEEEEECCCCCHHHHHHHHH
SIRRIGAFLIAVTGNRSSTLARYANNHLLVNIEEEACPHGLAPTASTTATLALGDALAIA
HHHHHCEEEEEEECCCCHHHHHHCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHH
LSKLKGFTPEDFALFHPGGSLGRKLLTKVEDVLQVRKQNPVVQSGTSVKEALFTMTASKM
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
GSTSVVDERGRLVGIITDGDIRRLLEESTDFLQKPVLEVMTKDPITIEKDRLAAEALKIM
CCCHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHH
EDKEVNDLPVVEDGKPVGMLNFQDLLRARVF
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC
>Mature Secondary Structure
MNEPVNLDEKMIIDCLQEARKVLEIEAYSVLKLKDSIGSEFADIVRVILESKGRVIFTGI
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHEEEHHHHCHHHHHHHHHHHHCCCCEEEEEC
GKSGLIGQKLAATFSSTGTPAFFVHAGEALHGDLGMVTGDDIIIAISNSGETEEVLSLVP
CCCCCCHHHHHHHHCCCCCCEEEEECCCHHCCCCCEEECCCEEEEECCCCCHHHHHHHHH
SIRRIGAFLIAVTGNRSSTLARYANNHLLVNIEEEACPHGLAPTASTTATLALGDALAIA
HHHHHCEEEEEEECCCCHHHHHHCCCEEEEEECHHCCCCCCCCCCCCHHHHHHHHHHHHH
LSKLKGFTPEDFALFHPGGSLGRKLLTKVEDVLQVRKQNPVVQSGTSVKEALFTMTASKM
HHHHCCCCCCCCEEECCCHHHHHHHHHHHHHHHHHHHCCCCCCCCCHHHHHHHHHHHHHC
GSTSVVDERGRLVGIITDGDIRRLLEESTDFLQKPVLEVMTKDPITIEKDRLAAEALKIM
CCCHHCCCCCCEEEEEECHHHHHHHHHHHHHHHHHHHHHHCCCCCEECHHHHHHHHHHHH
EDKEVNDLPVVEDGKPVGMLNFQDLLRARVF
HCCCCCCCCCCCCCCCCCCCCHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 11586360; 12142430 [H]