Click here to switch to the map view.

The map label for this gene is rfaQ [H]

Identifier: 220932723

GI number: 220932723

Start: 2016858

End: 2017904

Strand: Reverse

Name: rfaQ [H]

Synonym: Hore_18880

Alternate gene names: 220932723

Gene position: 2017904-2016858 (Counterclockwise)

Preceding gene: 220932724

Following gene: 220932722

Centisome position: 78.27

GC content: 44.32

Gene sequence:

>1047_bases
ATGACCGGACAGAAACCATCGATACCAGACCATATCCAGAAAGCTAAAAGAATCCTTATCATAGATTTGCTCTACCTGGG
TGATTTAATCTTTGCCACCCCCTTTATACGGAATTTAAGATATAATTATCCTGACGCCAGAATTGATATGGTGGTTAACA
GTAATTTTCATGATATAATAGCCGGTAATCCCTACCTGGATAATATCTATCCATATGATAAAAAATGGGATTTAAAGGAA
TCGTTTGCTTTTGCCAGAGGACTTAAGGCTAACAATTATGATGTGGGTTTAAATATTCATGGGAACTGGAGGACAGCCCT
GTTATTAAAGTTAATAAATCCCCGGTCTACTGCCGGATTTGCCACCAGGGGTCGGGGTATCTTTTTGGATAAAAAGCTAA
AACCTGCCGGGGGTTGTCATATGGTGGAAGTTTACCTCGATTTTTTAGAGGAACTGGGGCTTAATATCAAGAATAAAGAT
TTAGAACTGAGGCTTGATAAAACCGCTGAAGATAATATGATTGCCTTTTTAAGGAAAAATGGCGTCAGGGGTAAAGAGCA
TCTGGTGGGAATTAATACCGGTGGAACCTGGCCTGCTAAACGCTGGCCCGGGGAGAGGTTTGCAGCCCTGGCCGACAGGC
TTCAGAAAGAATATGAAGGGGTCAGGGTTATATTTACTGGAGGGCCGGGAGATGTGGACAGGGTTTACTCCATTATCAAA
AAGATGGAAACAGAGCCAGTGGTGGCTGCAGGGAAGACTACATTGCCCGAGCTGGTAGCCCTGGTAAGGTTGTGTGATGT
TGTTATAAGTGGTGATACCGGGCCTGTTCATGTTTCGGCTGCGGTGGGAACACCAACCCTGACATTGTTCGGTCCTTCTG
ATGAGGTTAAGTATAGACCCTACGGAACTGAACACCGGATAATATATAGGGATATTGATTGCCGGCCCTGTGGACAGCAG
GAATGTCCTGAAGGGCACCACCGGTGCTTGAGGGAGATCAGTGTTGATGAAGTTTTTGAGGAAATAAAGAAGAGTGGGTG
GTTTTAA

Upstream 100 bases:

>100_bases
CTGGAAACGGGAATGCCCGGCCAGTCATAGTTGTATGAAAAATATCAGGGTGGACGAAGTTCTGTCAGCAGCAGAAAGAA
TTCTGGGGGTGACCTGAATA

Downstream 100 bases:

>100_bases
TGGCAGAAAATAGCATTGGGGCCCTGGTTTTAACTTATAATGAAGAGGATAATATAAAGGACTGCCTGGAGAGTATTAAG
TGGGTAGATGAAATTGTAGT

Product: lipopolysaccharide heptosyltransferase III

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 348; Mature: 347

Protein sequence:

>348_residues
MTGQKPSIPDHIQKAKRILIIDLLYLGDLIFATPFIRNLRYNYPDARIDMVVNSNFHDIIAGNPYLDNIYPYDKKWDLKE
SFAFARGLKANNYDVGLNIHGNWRTALLLKLINPRSTAGFATRGRGIFLDKKLKPAGGCHMVEVYLDFLEELGLNIKNKD
LELRLDKTAEDNMIAFLRKNGVRGKEHLVGINTGGTWPAKRWPGERFAALADRLQKEYEGVRVIFTGGPGDVDRVYSIIK
KMETEPVVAAGKTTLPELVALVRLCDVVISGDTGPVHVSAAVGTPTLTLFGPSDEVKYRPYGTEHRIIYRDIDCRPCGQQ
ECPEGHHRCLREISVDEVFEEIKKSGWF

Sequences:

>Translated_348_residues
MTGQKPSIPDHIQKAKRILIIDLLYLGDLIFATPFIRNLRYNYPDARIDMVVNSNFHDIIAGNPYLDNIYPYDKKWDLKE
SFAFARGLKANNYDVGLNIHGNWRTALLLKLINPRSTAGFATRGRGIFLDKKLKPAGGCHMVEVYLDFLEELGLNIKNKD
LELRLDKTAEDNMIAFLRKNGVRGKEHLVGINTGGTWPAKRWPGERFAALADRLQKEYEGVRVIFTGGPGDVDRVYSIIK
KMETEPVVAAGKTTLPELVALVRLCDVVISGDTGPVHVSAAVGTPTLTLFGPSDEVKYRPYGTEHRIIYRDIDCRPCGQQ
ECPEGHHRCLREISVDEVFEEIKKSGWF
>Mature_347_residues
TGQKPSIPDHIQKAKRILIIDLLYLGDLIFATPFIRNLRYNYPDARIDMVVNSNFHDIIAGNPYLDNIYPYDKKWDLKES
FAFARGLKANNYDVGLNIHGNWRTALLLKLINPRSTAGFATRGRGIFLDKKLKPAGGCHMVEVYLDFLEELGLNIKNKDL
ELRLDKTAEDNMIAFLRKNGVRGKEHLVGINTGGTWPAKRWPGERFAALADRLQKEYEGVRVIFTGGPGDVDRVYSIIKK
METEPVVAAGKTTLPELVALVRLCDVVISGDTGPVHVSAAVGTPTLTLFGPSDEVKYRPYGTEHRIIYRDIDCRPCGQQE
CPEGHHRCLREISVDEVFEEIKKSGWF

Specific function: Catalyzes heptose transfer to the lipopolysaccharide core. It transfers a heptose, called heptose(III), to the heptose(II) of the inner core [H]

COG id: COG0859

COG function: function code M; ADP-heptose:LPS heptosyltransferase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the glycosyltransferase 9 family [H]

Homologues:

Organism=Escherichia coli, GI1790062, Length=297, Percent_Identity=34.006734006734, Blast_Score=147, Evalue=9e-37,
Organism=Escherichia coli, GI1790050, Length=344, Percent_Identity=24.7093023255814, Blast_Score=100, Evalue=2e-22,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR002201
- InterPro:   IPR011916 [H]

Pfam domain/function: PF01075 Glyco_transf_9 [H]

EC number: 2.4.1.-

Molecular weight: Translated: 39242; Mature: 39110

Theoretical pI: Translated: 8.34; Mature: 8.34

Prosite motif: PS00213 LIPOCALIN

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.7 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
1.7 %Cys     (Mature Protein)
1.2 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MTGQKPSIPDHIQKAKRILIIDLLYLGDLIFATPFIRNLRYNYPDARIDMVVNSNFHDII
CCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEE
AGNPYLDNIYPYDKKWDLKESFAFARGLKANNYDVGLNIHGNWRTALLLKLINPRSTAGF
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHEEEEHHCCCCCCCCC
ATRGRGIFLDKKLKPAGGCHMVEVYLDFLEELGLNIKNKDLELRLDKTAEDNMIAFLRKN
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCEEEEEECC
GVRGKEHLVGINTGGTWPAKRWPGERFAALADRLQKEYEGVRVIFTGGPGDVDRVYSIIK
CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
KMETEPVVAAGKTTLPELVALVRLCDVVISGDTGPVHVSAAVGTPTLTLFGPSDEVKYRP
HHCCCCEEECCCCCHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEECCCCCCEECC
YGTEHRIIYRDIDCRPCGQQECPEGHHRCLREISVDEVFEEIKKSGWF
CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCC
>Mature Secondary Structure 
TGQKPSIPDHIQKAKRILIIDLLYLGDLIFATPFIRNLRYNYPDARIDMVVNSNFHDII
CCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCCEEEEEECCCCCEEE
AGNPYLDNIYPYDKKWDLKESFAFARGLKANNYDVGLNIHGNWRTALLLKLINPRSTAGF
CCCCCCCCCCCCCCCCCHHHHHHHHHCCCCCCEEEEEEECCCHHHEEEEHHCCCCCCCCC
ATRGRGIFLDKKLKPAGGCHMVEVYLDFLEELGLNIKNKDLELRLDKTAEDNMIAFLRKN
CCCCCEEEEECCCCCCCCCHHHHHHHHHHHHHCCCEECCCEEEEECCCCCCCEEEEEECC
GVRGKEHLVGINTGGTWPAKRWPGERFAALADRLQKEYEGVRVIFTGGPGDVDRVYSIIK
CCCCCCEEEEECCCCCCCCCCCCCHHHHHHHHHHHHHCCCEEEEEECCCCCHHHHHHHHH
KMETEPVVAAGKTTLPELVALVRLCDVVISGDTGPVHVSAAVGTPTLTLFGPSDEVKYRP
HHCCCCEEECCCCCHHHHHHHHHHHHHEECCCCCCEEEEEECCCCEEEEECCCCCCEECC
YGTEHRIIYRDIDCRPCGQQECPEGHHRCLREISVDEVFEEIKKSGWF
CCCCCEEEEEECCCCCCCCCCCCHHHHHHHHHCCHHHHHHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 1732225; 1447141; 8041620; 9278503 [H]