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The map label for this gene is ytxD [H]

Identifier: 220932515

GI number: 220932515

Start: 1799619

End: 1800422

Strand: Reverse

Name: ytxD [H]

Synonym: Hore_16780

Alternate gene names: 220932515

Gene position: 1800422-1799619 (Counterclockwise)

Preceding gene: 220932516

Following gene: 220932514

Centisome position: 69.83

GC content: 44.15

Gene sequence:

>804_bases
ATGGATTTGTCGACTTTAATTGGTATCCTGACAGGAATAGTCCTCCTTGGTGGCGCTATCATTATGGGAGGAAATGCAGT
TATTTTCCTCAGTGTTCAGTCACTGATGATTGTTCTTGGGGGAACACTGGCCGGGACAATGGTAAGTTACTCTTTTAACG
AATTAAAGAAAATACCATCATTAATAAGGGTGGCCTTTCAGGAACATACTCTTGATTCAGATGAAATAATAGATATACTT
GTTGGTTTTGCTGAAAAGGCCAGGCGTGAGGGTTTGCTGGCCCTGGAGCAGGATGTCATGGAAATAAATGACCCGTTTTT
ACAAAAGGGTATTCAGCTGGTAGTTGACGGTACAGATCCCGAGCTTGTCAGAAACATCCTTGAAACAAAACTTACCTTCC
TTGAAGAAAGGCATCAAAAAGGGCGAGGACTCTTCAGTACCATGGGTCAGCTGGCTCCGTCATTTGGATTAATCGGGACC
CTCATCGGTTTAATCCAGATGTTAAGCCAGCTTGATGATCCGACCAATTTAGGTTCTGGTATGGCTGTAGCCCTTATTAC
TACCCTTTATGGTGCCCTCCTGGCAAACCTTTTATTTAATCCGCTGGCAGGTAAGTTGCGGATAAGGAGTCTTGAAGAGG
TACTGTTAAAAGAAGTTATGATTGAAGGGGTTTTGTCCATTCAGGCCGGTGAAAACCCGAGGATAGTAAGAGAAAAGTTA
AATGCCTTCCTGGCTACTGAAAGAGAAAGGATTGCTTCGGAGGCACCCAGGTTCGAAGAGATGGCGGTGGGTGAAAATGC
CTAA

Upstream 100 bases:

>100_bases
AAAATCCTGGTACTGGATGATGTTGACGATATTATAAAAAAGGTGATAGAGTATAAGCAGAAGGTTTTTGGTAACCTGAA
GGTAGAAGAGGGGTGAAATA

Downstream 100 bases:

>100_bases
ACTCAAAAAAGACCTGGAAGAGGAAAATAAGAATACTTCCCCGGGATGGATGGTTACATACGGGGATATGATGACCTTAC
TGTTAGTTTTCTTTGTTTTC

Product: MotA/TolQ/ExbB proton channel

Products: NA

Alternate protein names: ORF1 [H]

Number of amino acids: Translated: 267; Mature: 267

Protein sequence:

>267_residues
MDLSTLIGILTGIVLLGGAIIMGGNAVIFLSVQSLMIVLGGTLAGTMVSYSFNELKKIPSLIRVAFQEHTLDSDEIIDIL
VGFAEKARREGLLALEQDVMEINDPFLQKGIQLVVDGTDPELVRNILETKLTFLEERHQKGRGLFSTMGQLAPSFGLIGT
LIGLIQMLSQLDDPTNLGSGMAVALITTLYGALLANLLFNPLAGKLRIRSLEEVLLKEVMIEGVLSIQAGENPRIVREKL
NAFLATERERIASEAPRFEEMAVGENA

Sequences:

>Translated_267_residues
MDLSTLIGILTGIVLLGGAIIMGGNAVIFLSVQSLMIVLGGTLAGTMVSYSFNELKKIPSLIRVAFQEHTLDSDEIIDIL
VGFAEKARREGLLALEQDVMEINDPFLQKGIQLVVDGTDPELVRNILETKLTFLEERHQKGRGLFSTMGQLAPSFGLIGT
LIGLIQMLSQLDDPTNLGSGMAVALITTLYGALLANLLFNPLAGKLRIRSLEEVLLKEVMIEGVLSIQAGENPRIVREKL
NAFLATERERIASEAPRFEEMAVGENA
>Mature_267_residues
MDLSTLIGILTGIVLLGGAIIMGGNAVIFLSVQSLMIVLGGTLAGTMVSYSFNELKKIPSLIRVAFQEHTLDSDEIIDIL
VGFAEKARREGLLALEQDVMEINDPFLQKGIQLVVDGTDPELVRNILETKLTFLEERHQKGRGLFSTMGQLAPSFGLIGT
LIGLIQMLSQLDDPTNLGSGMAVALITTLYGALLANLLFNPLAGKLRIRSLEEVLLKEVMIEGVLSIQAGENPRIVREKL
NAFLATERERIASEAPRFEEMAVGENA

Specific function: May be involved in some transport function [H]

COG id: COG1291

COG function: function code N; Flagellar motor component

Gene ontology:

Cell location: Cell membrane; Multi-pass membrane protein (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the MotA family [H]

Homologues:

None

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000540
- InterPro:   IPR002898 [H]

Pfam domain/function: PF01618 MotA_ExbB [H]

EC number: NA

Molecular weight: Translated: 28974; Mature: 28974

Theoretical pI: Translated: 4.48; Mature: 4.48

Prosite motif: PS01307 MOTA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
3.7 %Met     (Translated Protein)
3.7 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
3.7 %Met     (Mature Protein)
3.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDLSTLIGILTGIVLLGGAIIMGGNAVIFLSVQSLMIVLGGTLAGTMVSYSFNELKKIPS
CCHHHHHHHHHHHHHHCCHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRVAFQEHTLDSDEIIDILVGFAEKARREGLLALEQDVMEINDPFLQKGIQLVVDGTDP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHCCCEEEECCCCH
ELVRNILETKLTFLEERHQKGRGLFSTMGQLAPSFGLIGTLIGLIQMLSQLDDPTNLGSG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
MAVALITTLYGALLANLLFNPLAGKLRIRSLEEVLLKEVMIEGVLSIQAGENPRIVREKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NAFLATERERIASEAPRFEEMAVGENA
HHHHHHHHHHHHHHCCCHHHHHCCCCC
>Mature Secondary Structure
MDLSTLIGILTGIVLLGGAIIMGGNAVIFLSVQSLMIVLGGTLAGTMVSYSFNELKKIPS
CCHHHHHHHHHHHHHHCCHHEECCCEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
LIRVAFQEHTLDSDEIIDILVGFAEKARREGLLALEQDVMEINDPFLQKGIQLVVDGTDP
HHHHHHHHHCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHCCCHHHHCCCEEEECCCCH
ELVRNILETKLTFLEERHQKGRGLFSTMGQLAPSFGLIGTLIGLIQMLSQLDDPTNLGSG
HHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHCCHHHHHHHHHHHHHHHHHCCCCCCCCCH
MAVALITTLYGALLANLLFNPLAGKLRIRSLEEVLLKEVMIEGVLSIQAGENPRIVREKL
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHH
NAFLATERERIASEAPRFEEMAVGENA
HHHHHHHHHHHHHHCCCHHHHHCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8200532 [H]