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The map label for this gene is whiG [H]

Identifier: 220932500

GI number: 220932500

Start: 1787136

End: 1787900

Strand: Reverse

Name: whiG [H]

Synonym: Hore_16630

Alternate gene names: 220932500

Gene position: 1787900-1787136 (Counterclockwise)

Preceding gene: 220932501

Following gene: 220932499

Centisome position: 69.35

GC content: 41.05

Gene sequence:

>765_bases
ATGGCAGTTTCTCAGGAAAAAGTTGAGTATCTTGACTTGTGGGAGGCCTATAAGGGTAAAGGTAGCCAGGAGGCCAGAAA
GGAATTAATACTAAACTATTTACCCCTCGTTAAATACCAGGTAGAGAGGGTCAAAATGATCATACCTGATTTTATAGAGG
AAGATGATCTGGAAAGCTACGGGATAATTGGCTTAATAGATGCTATTGAAAAATATGACTACAGACTGGGTATCAAGTTT
AACACATATGCTTCCCGACGAATCAGAGGATCTATTATTGATCACCTCAGGAAACTTGACTGGTTACCCCATTCTCTCCG
CCGGGAAGGGAAAGAACTCCAGAAGGTAGCTGATAAACTGGCTAAAGAACTGGGACGAAAACCGACTGTAGCTGAACTGG
CAAATAAGACTAATATTTCCCGGGAAAAGGTCACAAAAATCTATTCAAAGTTAAATTCAGCTAAATGGGTGTCCCTGTAT
GAAGACTGGGGCGAGTCGACAGTATTCAATTTTATTAAAGGTGATTGCCTTCCCCCTGACAGGATACTGGATAAAAAGGA
GAGGATAAAACTCCTGGCCAGGGCAATAGACCGGTTAAGTGAATCGGAGCGGACTGTTATTTCTCTATATTATTATGAGG
AATTAACCCAGAAAGAAATTGCAGAAGTTATGGGGTTGTCTCCAGCACGAATTTCCCAGATCCATAAAAGGGCGGTTTAC
AGGTTAAGGGGTTATTTAGCCAGGAGAAAATATGATTTATTATGA

Upstream 100 bases:

>100_bases
AAATAATAACAGTGATACAGGTGATAACAGTGAATTTACCCCGCTCGATCCTCCTATCCTGGAGGTAGATAATAGAGAGG
AGTAATAAGGGGGATAAATT

Downstream 100 bases:

>100_bases
TTTATAAGAAAGGAGAATTGAGATGATAGAGGTAGTTCGTGTTACTGCTCCCGATGAGAAAAAGGCCCTGGAAATAGGTA
AAAAGGAATTGGAGGCAAAA

Product: RNA polymerase, sigma 28 subunit, FliA/WhiG

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 254; Mature: 253

Protein sequence:

>254_residues
MAVSQEKVEYLDLWEAYKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESYGIIGLIDAIEKYDYRLGIKF
NTYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKLAKELGRKPTVAELANKTNISREKVTKIYSKLNSAKWVSLY
EDWGESTVFNFIKGDCLPPDRILDKKERIKLLARAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVY
RLRGYLARRKYDLL

Sequences:

>Translated_254_residues
MAVSQEKVEYLDLWEAYKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESYGIIGLIDAIEKYDYRLGIKF
NTYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKLAKELGRKPTVAELANKTNISREKVTKIYSKLNSAKWVSLY
EDWGESTVFNFIKGDCLPPDRILDKKERIKLLARAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVY
RLRGYLARRKYDLL
>Mature_253_residues
AVSQEKVEYLDLWEAYKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESYGIIGLIDAIEKYDYRLGIKFN
TYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKLAKELGRKPTVAELANKTNISREKVTKIYSKLNSAKWVSLYE
DWGESTVFNFIKGDCLPPDRILDKKERIKLLARAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVYR
LRGYLARRKYDLL

Specific function: The level of this sigma factor may be crucial in determining the developmental fate of hyphae [H]

COG id: COG1191

COG function: function code K; DNA-directed RNA polymerase specialized sigma subunit

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the sigma-70 factor family [H]

Homologues:

Organism=Escherichia coli, GI1788231, Length=221, Percent_Identity=36.6515837104072, Blast_Score=145, Evalue=2e-36,
Organism=Escherichia coli, GI1789448, Length=201, Percent_Identity=29.3532338308458, Blast_Score=62, Evalue=5e-11,

Paralogues:

None

Copy number: 10-20 (rich media) [C]

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR014284
- InterPro:   IPR000943
- InterPro:   IPR007627
- InterPro:   IPR007624
- InterPro:   IPR007630
- InterPro:   IPR012845
- InterPro:   IPR013325
- InterPro:   IPR013324
- InterPro:   IPR011991 [H]

Pfam domain/function: PF04542 Sigma70_r2; PF04539 Sigma70_r3; PF04545 Sigma70_r4 [H]

EC number: NA

Molecular weight: Translated: 29807; Mature: 29676

Theoretical pI: Translated: 9.75; Mature: 9.75

Prosite motif: PS00716 SIGMA70_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.4 %Cys     (Translated Protein)
1.2 %Met     (Translated Protein)
1.6 %Cys+Met (Translated Protein)
0.4 %Cys     (Mature Protein)
0.8 %Met     (Mature Protein)
1.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MAVSQEKVEYLDLWEAYKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESY
CCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GIIGLIDAIEKYDYRLGIKFNTYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKL
CHHHHHHHHHHHCHHCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AKELGRKPTVAELANKTNISREKVTKIYSKLNSAKWVSLYEDWGESTVFNFIKGDCLPPD
HHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCCHH
RILDKKERIKLLARAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVY
HHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RLRGYLARRKYDLL
HHHHHHHHHHHCCC
>Mature Secondary Structure 
AVSQEKVEYLDLWEAYKGKGSQEARKELILNYLPLVKYQVERVKMIIPDFIEEDDLESY
CCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCCC
GIIGLIDAIEKYDYRLGIKFNTYASRRIRGSIIDHLRKLDWLPHSLRREGKELQKVADKL
CHHHHHHHHHHHCHHCCEEECHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHH
AKELGRKPTVAELANKTNISREKVTKIYSKLNSAKWVSLYEDWGESTVFNFIKGDCLPPD
HHHHCCCCCHHHHHHHCCCCHHHHHHHHHHHCCHHHHHHHHHHCHHHHHHHHHCCCCCHH
RILDKKERIKLLARAIDRLSESERTVISLYYYEELTQKEIAEVMGLSPARISQIHKRAVY
HHHCHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
RLRGYLARRKYDLL
HHHHHHHHHHHCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 2507166; 12000953 [H]