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The map label for this gene is 220932359

Identifier: 220932359

GI number: 220932359

Start: 1628572

End: 1629288

Strand: Reverse

Name: 220932359

Synonym: Hore_15230

Alternate gene names: NA

Gene position: 1629288-1628572 (Counterclockwise)

Preceding gene: 220932360

Following gene: 220932358

Centisome position: 63.2

GC content: 28.73

Gene sequence:

>717_bases
ATGGACATTAACCAAGTCCTGGTTTTTAAAATAAAGGGTAAAATTGCACATTTCAAAAAATACTACAGCAATAAAAGTTC
TTTAACTTATAAAATTCCTCCCCGAACGGTTTTAATGGGGATAGTTGCTTCTATTTTAGAAAAACCCCGGGATAGTTATT
ATGAATTATTATCACCTCAGCAGGCTAAATTTGGAGTAAAAATAGAAAGTGAAAGTTATACTCATTTTGAATGTATGAAT
TATTTAAAAGAAGATGGTGGTCATACACAGGTAAGATTGCAATTGTTACTGCCAGCAAATAATATGTTATCTTATAAAGT
ATTTTTTACACATCAGGACGAATCTTTATTAAAAGAATTAGCAACAAAAATAAAGAATAAGATATATGGATATGGTATAT
ATCTGGGGCAGAGGCAGTTTAGAGCTACTGCTGAATTTGATGATTTAATAGAGGACATTGATATTATTAAAGATTATACT
GGGAATTTAAAAACATTAACATATAAGGATAATATAAAAAAATTAAATGATACTACAACATATAACCTAATTCTGGACAA
CATGCCAGTATCCTTTAAAAAAGTAAACTCTGGTCGAGAACCAGAAAAGGTTGTTGAAGTTTGTTATGAAGAAAATGGAG
CAAATATAAATGGGTCTTTTTATGAAGTAATAAAATTAAAAGATGATTATATAAGTTTTTATACTCCAGTGAGGTGA

Upstream 100 bases:

>100_bases
TGGAAAGATAATAAACTAACAGTTAAAGATAATGGCTTTGAAAAGTTATTAAATACGTTCCCTGTAAATGAATTAAATTA
TTAGGGTAGGAGTTGTTATT

Downstream 100 bases:

>100_bases
CTGGTTTGGAAAAATTATTTTCACACTATTCTTCAAATAAAAAAAGAGAGTTAGAAGTTCATTTGAAAAATGTAGCAGAA
GGCTGTAAAAATATTATCTT

Product: CRISPR-associated protein Cas5

Products: NA

Alternate protein names: CRISPR-Associated Cas5 Family Hmari Subtype Protein; CRISPR-Associated Cas5 Family Protein; Crispr-Associated Hmari Subtype; Cas5h Crispr-Associated Hmari Subtype; CRISPR-Associated Cas5h Family Protein

Number of amino acids: Translated: 238; Mature: 238

Protein sequence:

>238_residues
MDINQVLVFKIKGKIAHFKKYYSNKSSLTYKIPPRTVLMGIVASILEKPRDSYYELLSPQQAKFGVKIESESYTHFECMN
YLKEDGGHTQVRLQLLLPANNMLSYKVFFTHQDESLLKELATKIKNKIYGYGIYLGQRQFRATAEFDDLIEDIDIIKDYT
GNLKTLTYKDNIKKLNDTTTYNLILDNMPVSFKKVNSGREPEKVVEVCYEENGANINGSFYEVIKLKDDYISFYTPVR

Sequences:

>Translated_238_residues
MDINQVLVFKIKGKIAHFKKYYSNKSSLTYKIPPRTVLMGIVASILEKPRDSYYELLSPQQAKFGVKIESESYTHFECMN
YLKEDGGHTQVRLQLLLPANNMLSYKVFFTHQDESLLKELATKIKNKIYGYGIYLGQRQFRATAEFDDLIEDIDIIKDYT
GNLKTLTYKDNIKKLNDTTTYNLILDNMPVSFKKVNSGREPEKVVEVCYEENGANINGSFYEVIKLKDDYISFYTPVR
>Mature_238_residues
MDINQVLVFKIKGKIAHFKKYYSNKSSLTYKIPPRTVLMGIVASILEKPRDSYYELLSPQQAKFGVKIESESYTHFECMN
YLKEDGGHTQVRLQLLLPANNMLSYKVFFTHQDESLLKELATKIKNKIYGYGIYLGQRQFRATAEFDDLIEDIDIIKDYT
GNLKTLTYKDNIKKLNDTTTYNLILDNMPVSFKKVNSGREPEKVVEVCYEENGANINGSFYEVIKLKDDYISFYTPVR

Specific function: Unknown

COG id: COG1688

COG function: function code L; Uncharacterized protein predicted to be involved in DNA repair (RAMP superfamily)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

NA

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 27630; Mature: 27630

Theoretical pI: Translated: 8.79; Mature: 8.79

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.8 %Cys     (Translated Protein)
2.1 %Met     (Translated Protein)
2.9 %Cys+Met (Translated Protein)
0.8 %Cys     (Mature Protein)
2.1 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MDINQVLVFKIKGKIAHFKKYYSNKSSLTYKIPPRTVLMGIVASILEKPRDSYYELLSPQ
CCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHCCCC
QAKFGVKIESESYTHFECMNYLKEDGGHTQVRLQLLLPANNMLSYKVFFTHQDESLLKEL
CHHEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
ATKIKNKIYGYGIYLGQRQFRATAEFDDLIEDIDIIKDYTGNLKTLTYKDNIKKLNDTTT
HHHHHHHHEEEEEEECCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCEE
YNLILDNMPVSFKKVNSGREPEKVVEVCYEENGANINGSFYEVIKLKDDYISFYTPVR
EEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEECCCC
>Mature Secondary Structure
MDINQVLVFKIKGKIAHFKKYYSNKSSLTYKIPPRTVLMGIVASILEKPRDSYYELLSPQ
CCCCEEEEEEECCHHHHHHHHHCCCCCEEEECCHHHHHHHHHHHHHHCCCHHHHHHCCCC
QAKFGVKIESESYTHFECMNYLKEDGGHTQVRLQLLLPANNMLSYKVFFTHQDESLLKEL
CHHEEEEECCCCCHHHHHHHHHHHCCCCEEEEEEEEECCCCCEEEEEEEEECCHHHHHHH
ATKIKNKIYGYGIYLGQRQFRATAEFDDLIEDIDIIKDYTGNLKTLTYKDNIKKLNDTTT
HHHHHHHHEEEEEEECCHHHHCCCHHHHHHHHHHHHHHCCCCEEEEEECCCCHHCCCCEE
YNLILDNMPVSFKKVNSGREPEKVVEVCYEENGANINGSFYEVIKLKDDYISFYTPVR
EEEEECCCCCEEEECCCCCCHHHHHHHHHHCCCCCCCCCEEEEEEEECCCEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA