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The map label for this gene is araR [H]

Identifier: 220932342

GI number: 220932342

Start: 1607699

End: 1608805

Strand: Reverse

Name: araR [H]

Synonym: Hore_15050

Alternate gene names: 220932342

Gene position: 1608805-1607699 (Counterclockwise)

Preceding gene: 220932343

Following gene: 220932341

Centisome position: 62.4

GC content: 29.63

Gene sequence:

>1107_bases
ATGGAATTGAATAGAAAGAGTGATAAACCGTTATATAAACAAATTGAAGATATCATTATAAATAAAATTAAGGACGGGAT
TTTAAAACCTGGTAAGGCTTTACCATCAGAAAGGGAACTAGGTAAAGAATTAGAAGTTAGCAGGTTAACTGTAAGAAAAG
CAATTCAGGAGCTGGAACAAAAAGGTATTTTATATAAAATTCAGGGTAAGGGAACTTTTGTTAACGATAGGAAAAAAGCT
GGAGAACATGGCAATAAAATTGGTGTTATATCACATTTGTATAAAGGTGTTTTCATGGAGATACTTGAAGGTATTGAAGA
AGGTCTTGAGTCTGAAAGTTATGAATATCTACTTCGTAATTCCCAAAATGATTATAAAAAGGAAGAGAATATAATTCAAG
CAATGAAAGAGGAGGGAGTAAGTGGTTTTATTATTAGTCCTGTAGAAGATCAGAAAGATAGTAATGTTATATTTAACTTG
AAGGCAGAAGGTTATCCTATTGTATTAATAGATAGAAAACTTAATTATTGTGAAACAGACTGTGTTTTATCAGATAATAT
AGATGGTGGTTTTAAAGCAACTGAATATTTAATAAAACTTGGTCATAGTAGAATTGCGTTTTTAACCTACGAATTTAGAA
AAACAAGTAGTGTTAGAGACAGGATTAAAGGATATAGGTATGCATTAAAGCTTAATCAGTTGGAATTAGATGAAAGGTTA
TTATTTTCTTATAATAAAGACCTTTCCAGAGAAGAAAAAAATAAGATATTATACAATTTCATTAAAGAAAATAAACCTAC
CGCCATTATAGGTGTTCATAATGATGTTGCCCTGGATGTGGTTAAAATGTGTAGGGCCAATAACATAAGTATTCCTGAAG
ATATTTCTATAATTTGTTTTGATAACACAGATATTGTTAGACATTTAGAGGTTCCCCTGACTACCCTTGTTCAGGATGCT
AGAAAAATAGGTTATGATGCTGCCAAACTTATTGTCAAGAAAATTAATTCTCAAGAAGAAACAGGTATAATGAATCAAAT
ATATCATCCAGTAAAATTGATTGAAAGAAATTCATGTAAAAGTATCCTTCAAAAAAATGAAAAATAA

Upstream 100 bases:

>100_bases
AAAAAGAAGGATTTTAAAAAAATATATAGAATTAATGGTATATACCAACAATATACCAATGGTTTATTAAAGACACTTTG
TTTTATGGGGGCGTTTGAAA

Downstream 100 bases:

>100_bases
GAAATTAAAGTTTTATAATATAAATTATAATTTTATAAGTATTATCAATATTAAAAATTTTAAATAATATCAAACTGTTC
AGGAAAACGGTTTGTATAAG

Product: regulatory protein GntR HTH

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 368; Mature: 368

Protein sequence:

>368_residues
MELNRKSDKPLYKQIEDIIINKIKDGILKPGKALPSERELGKELEVSRLTVRKAIQELEQKGILYKIQGKGTFVNDRKKA
GEHGNKIGVISHLYKGVFMEILEGIEEGLESESYEYLLRNSQNDYKKEENIIQAMKEEGVSGFIISPVEDQKDSNVIFNL
KAEGYPIVLIDRKLNYCETDCVLSDNIDGGFKATEYLIKLGHSRIAFLTYEFRKTSSVRDRIKGYRYALKLNQLELDERL
LFSYNKDLSREEKNKILYNFIKENKPTAIIGVHNDVALDVVKMCRANNISIPEDISIICFDNTDIVRHLEVPLTTLVQDA
RKIGYDAAKLIVKKINSQEETGIMNQIYHPVKLIERNSCKSILQKNEK

Sequences:

>Translated_368_residues
MELNRKSDKPLYKQIEDIIINKIKDGILKPGKALPSERELGKELEVSRLTVRKAIQELEQKGILYKIQGKGTFVNDRKKA
GEHGNKIGVISHLYKGVFMEILEGIEEGLESESYEYLLRNSQNDYKKEENIIQAMKEEGVSGFIISPVEDQKDSNVIFNL
KAEGYPIVLIDRKLNYCETDCVLSDNIDGGFKATEYLIKLGHSRIAFLTYEFRKTSSVRDRIKGYRYALKLNQLELDERL
LFSYNKDLSREEKNKILYNFIKENKPTAIIGVHNDVALDVVKMCRANNISIPEDISIICFDNTDIVRHLEVPLTTLVQDA
RKIGYDAAKLIVKKINSQEETGIMNQIYHPVKLIERNSCKSILQKNEK
>Mature_368_residues
MELNRKSDKPLYKQIEDIIINKIKDGILKPGKALPSERELGKELEVSRLTVRKAIQELEQKGILYKIQGKGTFVNDRKKA
GEHGNKIGVISHLYKGVFMEILEGIEEGLESESYEYLLRNSQNDYKKEENIIQAMKEEGVSGFIISPVEDQKDSNVIFNL
KAEGYPIVLIDRKLNYCETDCVLSDNIDGGFKATEYLIKLGHSRIAFLTYEFRKTSSVRDRIKGYRYALKLNQLELDERL
LFSYNKDLSREEKNKILYNFIKENKPTAIIGVHNDVALDVVKMCRANNISIPEDISIICFDNTDIVRHLEVPLTTLVQDA
RKIGYDAAKLIVKKINSQEETGIMNQIYHPVKLIERNSCKSILQKNEK

Specific function: Transcriptional repressor of the arabinose utilization genes [H]

COG id: COG1609

COG function: function code K; Transcriptional regulators

Gene ontology:

Cell location: Cytoplasmic [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HTH gntR-type DNA-binding domain [H]

Homologues:

Organism=Escherichia coli, GI1790369, Length=303, Percent_Identity=24.4224422442244, Blast_Score=89, Evalue=4e-19,
Organism=Escherichia coli, GI1790194, Length=245, Percent_Identity=24.8979591836735, Blast_Score=87, Evalue=1e-18,
Organism=Escherichia coli, GI1787948, Length=282, Percent_Identity=23.758865248227, Blast_Score=84, Evalue=1e-17,
Organism=Escherichia coli, GI1789068, Length=287, Percent_Identity=24.0418118466899, Blast_Score=79, Evalue=7e-16,
Organism=Escherichia coli, GI1789202, Length=279, Percent_Identity=23.6559139784946, Blast_Score=73, Evalue=3e-14,
Organism=Escherichia coli, GI1786950, Length=70, Percent_Identity=51.4285714285714, Blast_Score=72, Evalue=4e-14,
Organism=Escherichia coli, GI1786303, Length=63, Percent_Identity=50.7936507936508, Blast_Score=67, Evalue=2e-12,
Organism=Escherichia coli, GI87082252, Length=75, Percent_Identity=40, Blast_Score=66, Evalue=4e-12,
Organism=Escherichia coli, GI1788474, Length=275, Percent_Identity=24, Blast_Score=65, Evalue=6e-12,
Organism=Escherichia coli, GI1788418, Length=69, Percent_Identity=40.5797101449275, Blast_Score=64, Evalue=2e-11,
Organism=Escherichia coli, GI1789993, Length=105, Percent_Identity=33.3333333333333, Blast_Score=63, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR000524
- InterPro:   IPR001761
- InterPro:   IPR011991 [H]

Pfam domain/function: PF00392 GntR; PF00532 Peripla_BP_1 [H]

EC number: NA

Molecular weight: Translated: 42264; Mature: 42264

Theoretical pI: Translated: 8.17; Mature: 8.17

Prosite motif: PS50949 HTH_GNTR

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.4 %Cys     (Translated Protein)
1.4 %Met     (Translated Protein)
2.7 %Cys+Met (Translated Protein)
1.4 %Cys     (Mature Protein)
1.4 %Met     (Mature Protein)
2.7 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MELNRKSDKPLYKQIEDIIINKIKDGILKPGKALPSERELGKELEVSRLTVRKAIQELEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHH
KGILYKIQGKGTFVNDRKKAGEHGNKIGVISHLYKGVFMEILEGIEEGLESESYEYLLRN
CCCEEEECCCCCEECCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
SQNDYKKEENIIQAMKEEGVSGFIISPVEDQKDSNVIFNLKAEGYPIVLIDRKLNYCETD
CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCC
CVLSDNIDGGFKATEYLIKLGHSRIAFLTYEFRKTSSVRDRIKGYRYALKLNQLELDERL
CEEECCCCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHEEEEECHHHHHHHH
LFSYNKDLSREEKNKILYNFIKENKPTAIIGVHNDVALDVVKMCRANNISIPEDISIICF
HHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEE
DNTDIVRHLEVPLTTLVQDARKIGYDAAKLIVKKINSQEETGIMNQIYHPVKLIERNSCK
CCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHH
SILQKNEK
HHHHCCCC
>Mature Secondary Structure
MELNRKSDKPLYKQIEDIIINKIKDGILKPGKALPSERELGKELEVSRLTVRKAIQELEQ
CCCCCCCCCHHHHHHHHHHHHHHHHHCCCCCCCCCCHHHHCHHHHHHHHHHHHHHHHHHH
KGILYKIQGKGTFVNDRKKAGEHGNKIGVISHLYKGVFMEILEGIEEGLESESYEYLLRN
CCCEEEECCCCCEECCHHHHCCCCCEEHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHC
SQNDYKKEENIIQAMKEEGVSGFIISPVEDQKDSNVIFNLKAEGYPIVLIDRKLNYCETD
CCCHHHHHHHHHHHHHHCCCCEEEECCCCCCCCCCEEEEEECCCEEEEEEECCCCCCCCC
CVLSDNIDGGFKATEYLIKLGHSRIAFLTYEFRKTSSVRDRIKGYRYALKLNQLELDERL
CEEECCCCCCHHHHHHHHHHCCCEEEEEEEEHHHHHHHHHHHHHHHEEEEECHHHHHHHH
LFSYNKDLSREEKNKILYNFIKENKPTAIIGVHNDVALDVVKMCRANNISIPEDISIICF
HHHHCCCCCHHHHHHHHHHHHHCCCCEEEEECCCHHHHHHHHHHCCCCCCCCCCCEEEEE
DNTDIVRHLEVPLTTLVQDARKIGYDAAKLIVKKINSQEETGIMNQIYHPVKLIERNSCK
CCCCHHHHHHCCHHHHHHHHHHHCHHHHHHHHHHHCCCHHCCHHHHHHHHHHHHHHHHHH
SILQKNEK
HHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: NA