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The map label for this gene is yprB [H]

Identifier: 220932298

GI number: 220932298

Start: 1556991

End: 1558211

Strand: Reverse

Name: yprB [H]

Synonym: Hore_14620

Alternate gene names: 220932298

Gene position: 1558211-1556991 (Counterclockwise)

Preceding gene: 220932299

Following gene: 220932295

Centisome position: 60.44

GC content: 39.8

Gene sequence:

>1221_bases
ATGAATTTGCGGGAGAAGTTGAAAAAGATAACAGTAGAGGGTGGTAACCGGGGGAATAAAGATAACCAGACATCACATAA
CACTCTCAGAATATCGCTAGAAGGTGCTATAGAAATATCAAATGAGGCCGGTGGTTTTTTAAAAAAGGAAAAAACATACC
CTCTGGACTATAAACACGGGATTTATAAACTAAGTGATATCAATAAGTTAGGCCCCGGGGGATTGTCAAAACTCGATAGT
GGAGGTGTTAGCGGGGTTGAAAACATAACTCCAGGTGATCTCCTTTTTGTTGATACGGAAACAACGGGTCTTATGGGGGG
CAGTGGAACCCTGGTTTTCCTGGTCGGTATCGGGTATTTTGATAAGAGTAATTTTAAAATAGAGCAGTTTTTAATCAGGG
ATTTCGAAGATGAACCTGCTATGCTGTTTCATCTGGGTAATATTTTGAAGGATTATCCGGCTATTGTAAGTTTTAACGGG
AAGTCTTTTGACCTTCCTCTATTAAACTCCCGTTTTATTTTAAACAGGTTCAATCCGCTGGAGTTTGAAAACCATATTGA
CTTATTATACCCGGCCCGGAGGGTATGGAATCACCTTGAGTCCTGTGCCCTGGGTAGCCTTGAGGAGAGGGTTTTAAACA
TCAACAGGATAGATGATCTGCCGGGTCATGAGGTTCCAAAAACATTTTTCAGGTTTTTAAACGAAAAGAAAGGTCAGTTA
CTACAACCTGTTTTAAAGCATAATCTTCTAGATATTTTGACCCTGGTAACCCTGATGGTTCATCTGGTCAACGCCTTTTC
CGGGGTCATTGAACTCACTGGAGAGGAACTCTATAATCTGGGAAAAGCCCATGAGAGGGATAAGAATTTAATGGAAAGTA
TAAAATGTTATGAAATGGCTTTGAAGAGAACGAAAAATTCCTGTTTAAGGAGCAAAATTTGCCACAGACTATCATGGCAG
TATAAAAGAGCGGGGAGATGGAAGGAAGCTGTAACCGTCTGGGAGGAAATGATAAGTAATAACCTCGGAGGAATCTTCCC
TTATGTGGAACTGGCTAAATATTATGAACACCGGGAAAAAAATTTAACCAGGGCATTTAAATATACTGAACAGGCCCTGG
CTTATTTAAACAAATATAGAGCTTTAACTTTAAACAATGAAAAACGCGAGGAACTGATTTATCGGCAAAACCGTATTAGG
CATAAATTAATGAGGGCGTAA

Upstream 100 bases:

>100_bases
CCTGTTCTGGAGGTTGTCCGGGATGTGTTGGTCCCGTCAATGAAATTGGTCTTCAGGGTAAAGATTATACCCGGGTTTTA
CTTAAGGAGGCCCTGGGGAG

Downstream 100 bases:

>100_bases
GCGAGTGATTTTTTCTGATTCGTGTTCCATTTTGGGTATCTTTATTTTAAGTACGCCATTGTTGACCCGGGCTTCAGCTT
TTTTATGGTTAACCCGGGCT

Product: hypothetical protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 406; Mature: 406

Protein sequence:

>406_residues
MNLREKLKKITVEGGNRGNKDNQTSHNTLRISLEGAIEISNEAGGFLKKEKTYPLDYKHGIYKLSDINKLGPGGLSKLDS
GGVSGVENITPGDLLFVDTETTGLMGGSGTLVFLVGIGYFDKSNFKIEQFLIRDFEDEPAMLFHLGNILKDYPAIVSFNG
KSFDLPLLNSRFILNRFNPLEFENHIDLLYPARRVWNHLESCALGSLEERVLNINRIDDLPGHEVPKTFFRFLNEKKGQL
LQPVLKHNLLDILTLVTLMVHLVNAFSGVIELTGEELYNLGKAHERDKNLMESIKCYEMALKRTKNSCLRSKICHRLSWQ
YKRAGRWKEAVTVWEEMISNNLGGIFPYVELAKYYEHREKNLTRAFKYTEQALAYLNKYRALTLNNEKREELIYRQNRIR
HKLMRA

Sequences:

>Translated_406_residues
MNLREKLKKITVEGGNRGNKDNQTSHNTLRISLEGAIEISNEAGGFLKKEKTYPLDYKHGIYKLSDINKLGPGGLSKLDS
GGVSGVENITPGDLLFVDTETTGLMGGSGTLVFLVGIGYFDKSNFKIEQFLIRDFEDEPAMLFHLGNILKDYPAIVSFNG
KSFDLPLLNSRFILNRFNPLEFENHIDLLYPARRVWNHLESCALGSLEERVLNINRIDDLPGHEVPKTFFRFLNEKKGQL
LQPVLKHNLLDILTLVTLMVHLVNAFSGVIELTGEELYNLGKAHERDKNLMESIKCYEMALKRTKNSCLRSKICHRLSWQ
YKRAGRWKEAVTVWEEMISNNLGGIFPYVELAKYYEHREKNLTRAFKYTEQALAYLNKYRALTLNNEKREELIYRQNRIR
HKLMRA
>Mature_406_residues
MNLREKLKKITVEGGNRGNKDNQTSHNTLRISLEGAIEISNEAGGFLKKEKTYPLDYKHGIYKLSDINKLGPGGLSKLDS
GGVSGVENITPGDLLFVDTETTGLMGGSGTLVFLVGIGYFDKSNFKIEQFLIRDFEDEPAMLFHLGNILKDYPAIVSFNG
KSFDLPLLNSRFILNRFNPLEFENHIDLLYPARRVWNHLESCALGSLEERVLNINRIDDLPGHEVPKTFFRFLNEKKGQL
LQPVLKHNLLDILTLVTLMVHLVNAFSGVIELTGEELYNLGKAHERDKNLMESIKCYEMALKRTKNSCLRSKICHRLSWQ
YKRAGRWKEAVTVWEEMISNNLGGIFPYVELAKYYEHREKNLTRAFKYTEQALAYLNKYRALTLNNEKREELIYRQNRIR
HKLMRA

Specific function: Unknown

COG id: COG3359

COG function: function code L; Predicted exonuclease

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: NA

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR012337
- InterPro:   IPR011990 [H]

Pfam domain/function: NA

EC number: NA

Molecular weight: Translated: 46733; Mature: 46733

Theoretical pI: Translated: 9.36; Mature: 9.36

Prosite motif: PS50293 TPR_REGION

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
2.0 %Met     (Translated Protein)
3.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
2.0 %Met     (Mature Protein)
3.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MNLREKLKKITVEGGNRGNKDNQTSHNTLRISLEGAIEISNEAGGFLKKEKTYPLDYKHG
CCHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
IYKLSDINKLGPGGLSKLDSGGVSGVENITPGDLLFVDTETTGLMGGSGTLVFLVGIGYF
CEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECEE
DKSNFKIEQFLIRDFEDEPAMLFHLGNILKDYPAIVSFNGKSFDLPLLNSRFILNRFNPL
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHHHCCCCCC
EFENHIDLLYPARRVWNHLESCALGSLEERVLNINRIDDLPGHEVPKTFFRFLNEKKGQL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
LQPVLKHNLLDILTLVTLMVHLVNAFSGVIELTGEELYNLGKAHERDKNLMESIKCYEMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRTKNSCLRSKICHRLSWQYKRAGRWKEAVTVWEEMISNNLGGIFPYVELAKYYEHREK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NLTRAFKYTEQALAYLNKYRALTLNNEKREELIYRQNRIRHKLMRA
HHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHCC
>Mature Secondary Structure
MNLREKLKKITVEGGNRGNKDNQTSHNTLRISLEGAIEISNEAGGFLKKEKTYPLDYKHG
CCHHHHHHHEECCCCCCCCCCCCCCCCEEEEEEEEEEEECCCCCCCCCCCCCCCCCCCCC
IYKLSDINKLGPGGLSKLDSGGVSGVENITPGDLLFVDTETTGLMGGSGTLVFLVGIGYF
CEEECCCCCCCCCCCHHCCCCCCCCCCCCCCCCEEEEECCCCCCCCCCCCEEEEEEECEE
DKSNFKIEQFLIRDFEDEPAMLFHLGNILKDYPAIVSFNGKSFDLPLLNSRFILNRFNPL
CCCCCHHHHHHHHCCCCCCHHHHHHHHHHHHCCCEEEECCCEECCCCCCCHHHHCCCCCC
EFENHIDLLYPARRVWNHLESCALGSLEERVLNINRIDDLPGHEVPKTFFRFLNEKKGQL
CCCCCCHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHCCHHH
LQPVLKHNLLDILTLVTLMVHLVNAFSGVIELTGEELYNLGKAHERDKNLMESIKCYEMA
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHH
LKRTKNSCLRSKICHRLSWQYKRAGRWKEAVTVWEEMISNNLGGIFPYVELAKYYEHREK
HHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHH
NLTRAFKYTEQALAYLNKYRALTLNNEKREELIYRQNRIRHKLMRA
HHHHHHHHHHHHHHHHHHHHEEEECCHHHHHHHHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 8760912; 9384377; 3145906 [H]