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The map label for this gene is ycfF [C]

Identifier: 220932112

GI number: 220932112

Start: 1368261

End: 1368605

Strand: Reverse

Name: ycfF [C]

Synonym: Hore_12750

Alternate gene names: 220932112

Gene position: 1368605-1368261 (Counterclockwise)

Preceding gene: 220932113

Following gene: 220932111

Centisome position: 53.08

GC content: 42.03

Gene sequence:

>345_bases
ATGGGTGATTGTATTTTTTGCAAAATTGCAAATGGGGAAATGGATACAGATTTAGTATATGAGGACGAAAAAGTGGTCGC
CTTCAAAGATATCAACCCACAGGCCCCTGTCCACCTTTTAATTGTGCCCAGAAAACATATCCCGACTCTTCTTGACCTGG
AAAAGAGTGATGAAGAACTGATTGGTCATATATATAAAATCGCATCTAAACTGGCCCGGGAAGAAGGTATTGCTGACAGG
GGTTTCAGGGTAGTTTCTAACTGTAATGAAGAGGGAGGCCAGACTGTTTTTCATATCCATTTCCATTTACTGGGTGGACG
TAATTTGCAGTGGCCTCCAGGTTAA

Upstream 100 bases:

>100_bases
AAGATAACTATACAGCCCGGTTAAAATATATTTAGTTAAGTGTATCATTATTTTTTTAAATCAATACATTTGATAAATCA
ACATAAGTGAGGTGAAACTT

Downstream 100 bases:

>100_bases
TTACATATTGAATTAAACAGGGGGTTTGAGATATGAAATCATTAAAAGAACAGTTAGTTGAAGATATGAAAAAGGCAATG
AAAGAAAAAGATAAGATGAA

Product: histidine triad (HIT) protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 114; Mature: 113

Protein sequence:

>114_residues
MGDCIFCKIANGEMDTDLVYEDEKVVAFKDINPQAPVHLLIVPRKHIPTLLDLEKSDEELIGHIYKIASKLAREEGIADR
GFRVVSNCNEEGGQTVFHIHFHLLGGRNLQWPPG

Sequences:

>Translated_114_residues
MGDCIFCKIANGEMDTDLVYEDEKVVAFKDINPQAPVHLLIVPRKHIPTLLDLEKSDEELIGHIYKIASKLAREEGIADR
GFRVVSNCNEEGGQTVFHIHFHLLGGRNLQWPPG
>Mature_113_residues
GDCIFCKIANGEMDTDLVYEDEKVVAFKDINPQAPVHLLIVPRKHIPTLLDLEKSDEELIGHIYKIASKLAREEGIADRG
FRVVSNCNEEGGQTVFHIHFHLLGGRNLQWPPG

Specific function: Unknown

COG id: COG0537

COG function: function code FGR; Diadenosine tetraphosphate (Ap4A) hydrolase and other HIT family hydrolases

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Unknown [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 HIT domain [H]

Homologues:

Organism=Homo sapiens, GI14211923, Length=111, Percent_Identity=45.045045045045, Blast_Score=122, Evalue=5e-29,
Organism=Homo sapiens, GI4885413, Length=113, Percent_Identity=45.1327433628319, Blast_Score=119, Evalue=4e-28,
Organism=Escherichia coli, GI1787346, Length=107, Percent_Identity=49.5327102803738, Blast_Score=106, Evalue=5e-25,
Organism=Caenorhabditis elegans, GI17506713, Length=112, Percent_Identity=46.4285714285714, Blast_Score=120, Evalue=2e-28,
Organism=Drosophila melanogaster, GI28574010, Length=112, Percent_Identity=49.1071428571429, Blast_Score=120, Evalue=1e-28,
Organism=Drosophila melanogaster, GI24581222, Length=112, Percent_Identity=49.1071428571429, Blast_Score=120, Evalue=2e-28,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011146
- InterPro:   IPR011151
- InterPro:   IPR019808
- InterPro:   IPR001310 [H]

Pfam domain/function: PF01230 HIT [H]

EC number: NA

Molecular weight: Translated: 12820; Mature: 12689

Theoretical pI: Translated: 5.52; Mature: 5.52

Prosite motif: PS00892 HIT_1 ; PS51084 HIT_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.6 %Cys     (Translated Protein)
1.8 %Met     (Translated Protein)
4.4 %Cys+Met (Translated Protein)
2.7 %Cys     (Mature Protein)
0.9 %Met     (Mature Protein)
3.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MGDCIFCKIANGEMDTDLVYEDEKVVAFKDINPQAPVHLLIVPRKHIPTLLDLEKSDEEL
CCCEEEEEECCCCCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCHHHH
IGHIYKIASKLAREEGIADRGFRVVSNCNEEGGQTVFHIHFHLLGGRNLQWPPG
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCC
>Mature Secondary Structure 
GDCIFCKIANGEMDTDLVYEDEKVVAFKDINPQAPVHLLIVPRKHIPTLLDLEKSDEEL
CCEEEEEECCCCCCCCEEECCCEEEEEECCCCCCCEEEEEECCCCCCEEEECCCCHHHH
IGHIYKIASKLAREEGIADRGFRVVSNCNEEGGQTVFHIHFHLLGGRNLQWPPG
HHHHHHHHHHHHHHCCCCCCCEEEECCCCCCCCCEEEEEEEEEECCCCCCCCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9537320 [H]