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The map label for this gene is recO [H]

Identifier: 220932085

GI number: 220932085

Start: 1342088

End: 1342864

Strand: Reverse

Name: recO [H]

Synonym: Hore_12480

Alternate gene names: 220932085

Gene position: 1342864-1342088 (Counterclockwise)

Preceding gene: 220932086

Following gene: 220932084

Centisome position: 52.09

GC content: 36.16

Gene sequence:

>777_bases
ATGCCATTATTTAATACTGAAGGTATTGTCTTAAAACAATTTGATCTCGGTGAGGCTGACAAGATAATTACCTTTATTAC
CAGAGATATGGGAAAACTCAGGGCAGTTGCCAAGGGGGTTCGTAAAACCCGGAGTTCTATATCCGGTCTGGTTCTCCCTT
TTAGTTATGCTGAGGTAACTATTTACAGGGGGCGGTCTCTGGATAAAATTAACCGGATTAAGGTTAAATACTCCTTTTCA
CCCCTCAGGGAAGATTTGACAAGAATGGCTTATGCTTCATACATGGCAGAATTTATTGAAAAAGTAAGTGTTGAAGATGA
TAATAACAGGGCATTATTTTCACTTCTTTTAAGTAGTTTTCACAGACTCTTAAAGGCAGAAGAAATCTCTGAGTACAATC
ATATAATTCTTGCTTTCAAAATAAGAATACTTGTTATTCTGGGGATCAAGCCAGAGCTCAGTAGTTGTGTTGATTGTGGA
CAGCAGAATAATCCTGGTTCTATTAATATTTTCAGTATAGAACGTGGTGGCCTCCTGTGTCATAATTGTAGCTCTAATCA
TATGGATGGAATGGGTGGAGTCCAGAAAATATCGGGGGAATCTTTAAGGATAATGGCCAATATAATAGATAGTGGATTAA
AACCTCTCGATAAACTTAAAATATCAACACAGGCCTTTGAAGAACTCGATGGTCTACTTGATTCTTTTATTACTTATCAT
TTAGATCTTAGATTTAAATCCCTTGATTTTTTGCATATGATTAGAGATTTGGGTTAA

Upstream 100 bases:

>100_bases
TGGCTATGCTTGATGCAGGGGCCAACAGGATTGGTACCAGTTCCGGAGTAGCTATTGTTACCGGCGAAACTGATGACGGG
GATAAAGAGTATTAAAATAT

Downstream 100 bases:

>100_bases
ACTTATTATGAGGTGATTTTATGGATAAATTAGAAAAGATTGATATGATCCGGCAACGACTCAATGTTAGCTATGAAAAA
GCCAATCAGGCCCTTGAGGA

Product: DNA repair protein RecO

Products: NA

Alternate protein names: Recombination protein O [H]

Number of amino acids: Translated: 258; Mature: 257

Protein sequence:

>258_residues
MPLFNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVTIYRGRSLDKINRIKVKYSFS
PLREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSFHRLLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCG
QQNNPGSINIFSIERGGLLCHNCSSNHMDGMGGVQKISGESLRIMANIIDSGLKPLDKLKISTQAFEELDGLLDSFITYH
LDLRFKSLDFLHMIRDLG

Sequences:

>Translated_258_residues
MPLFNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVTIYRGRSLDKINRIKVKYSFS
PLREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSFHRLLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCG
QQNNPGSINIFSIERGGLLCHNCSSNHMDGMGGVQKISGESLRIMANIIDSGLKPLDKLKISTQAFEELDGLLDSFITYH
LDLRFKSLDFLHMIRDLG
>Mature_257_residues
PLFNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVTIYRGRSLDKINRIKVKYSFSP
LREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSFHRLLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCGQ
QNNPGSINIFSIERGGLLCHNCSSNHMDGMGGVQKISGESLRIMANIIDSGLKPLDKLKISTQAFEELDGLLDSFITYHL
DLRFKSLDFLHMIRDLG

Specific function: Involved in DNA repair and recF pathway recombination [H]

COG id: COG1381

COG function: function code L; Recombinational DNA repair protein (RecF pathway)

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the recO family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001164
- InterPro:   IPR022572
- InterPro:   IPR016027
- InterPro:   IPR003717
- InterPro:   IPR013088 [H]

Pfam domain/function: PF02565 RecO; PF11967 RecO_N [H]

EC number: NA

Molecular weight: Translated: 29073; Mature: 28942

Theoretical pI: Translated: 8.31; Mature: 8.31

Prosite motif: PS00136 SUBTILASE_ASP

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.6 %Cys     (Translated Protein)
3.1 %Met     (Translated Protein)
4.7 %Cys+Met (Translated Protein)
1.6 %Cys     (Mature Protein)
2.7 %Met     (Mature Protein)
4.3 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MPLFNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVT
CCCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE
IYRGRSLDKINRIKVKYSFSPLREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSF
EECCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
HRLLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCGQQNNPGSINIFSIERGGLLC
HHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEEECCCEEE
HNCSSNHMDGMGGVQKISGESLRIMANIIDSGLKPLDKLKISTQAFEELDGLLDSFITYH
ECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLRFKSLDFLHMIRDLG
HEEEEHHHHHHHHHHHCC
>Mature Secondary Structure 
PLFNTEGIVLKQFDLGEADKIITFITRDMGKLRAVAKGVRKTRSSISGLVLPFSYAEVT
CCCCCCCEEEEECCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEEEEE
IYRGRSLDKINRIKVKYSFSPLREDLTRMAYASYMAEFIEKVSVEDDNNRALFSLLLSSF
EECCCCCCCHHEEEEEECCCHHHHHHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHH
HRLLKAEEISEYNHIILAFKIRILVILGIKPELSSCVDCGQQNNPGSINIFSIERGGLLC
HHHHHHHHHHHHHHHHHEEEEEEEEEECCCCCHHHHHHCCCCCCCCEEEEEEEECCCEEE
HNCSSNHMDGMGGVQKISGESLRIMANIIDSGLKPLDKLKISTQAFEELDGLLDSFITYH
ECCCCCCCCCCCCHHHCCCCHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
LDLRFKSLDFLHMIRDLG
HEEEEHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA