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The map label for this gene is exbD [C]

Identifier: 220932017

GI number: 220932017

Start: 1277189

End: 1277590

Strand: Reverse

Name: exbD [C]

Synonym: Hore_11800

Alternate gene names: 220932017

Gene position: 1277590-1277189 (Counterclockwise)

Preceding gene: 220932018

Following gene: 220932016

Centisome position: 49.55

GC content: 33.58

Gene sequence:

>402_bases
ATGTTAAAAACTTCTCTTAAGAAAAAACCATCTATTAATATAATTCCAATGATTGATGTTATCTTCTTTTTACTCGTCTT
TTTTATGTTGTTTACAACCTTTCGCACAACCCCTTACGGTATCGATCTTCAGTTACCAAAAGCGGTAACTGTTACCGGCC
AACAGGAAAATAATATGATTGTCAATATAAATGAAAAGGGCGAATTATATTACCGTGGAGATAAGGTAACTATGTCCAGG
TTAAAAAATATCGCTAAAAAAAGAACTAACCAAACAGATAATCTAGTTGTTATTATTAATGCCGATAAGGATACCAAATA
CCGTTACATAGTACAGGTTATGGATAATTTACGCCAGGTAGGAATTTATAAGCTGGCACTTGCTGCCGAAAAAGAGGGGT
AA

Upstream 100 bases:

>100_bases
TATTCTTACTTTGCCAATAAGGTTGAAAATAAGGCCCATGAAATGAATTTAAGTATGATCGATATTTTAGAGGTGGTTGG
AAATAACAGGAGGGAAGATA

Downstream 100 bases:

>100_bases
TCTAAATGTATTATAGAAAAGATTCCAGTCGTTTTATGTTTTATATTATTATTTCATCCCTAATCCACTTAGGGATTATT
ATGTTTTTTACAATGGGAAA

Product: Biopolymer transport protein ExbD/TolR

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 133; Mature: 133

Protein sequence:

>133_residues
MLKTSLKKKPSINIIPMIDVIFFLLVFFMLFTTFRTTPYGIDLQLPKAVTVTGQQENNMIVNINEKGELYYRGDKVTMSR
LKNIAKKRTNQTDNLVVIINADKDTKYRYIVQVMDNLRQVGIYKLALAAEKEG

Sequences:

>Translated_133_residues
MLKTSLKKKPSINIIPMIDVIFFLLVFFMLFTTFRTTPYGIDLQLPKAVTVTGQQENNMIVNINEKGELYYRGDKVTMSR
LKNIAKKRTNQTDNLVVIINADKDTKYRYIVQVMDNLRQVGIYKLALAAEKEG
>Mature_133_residues
MLKTSLKKKPSINIIPMIDVIFFLLVFFMLFTTFRTTPYGIDLQLPKAVTVTGQQENNMIVNINEKGELYYRGDKVTMSR
LKNIAKKRTNQTDNLVVIINADKDTKYRYIVQVMDNLRQVGIYKLALAAEKEG

Specific function: Involved In The Tonb-Dependent Energy-Dependent Transport Of Various Receptor-Bound Substrates. [C]

COG id: COG0848

COG function: function code U; Biopolymer transport protein

Gene ontology:

Cell location: Cell inner membrane; Single-pass type II membrane protein (Probable) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the exbD/tolR family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003400 [H]

Pfam domain/function: PF02472 ExbD [H]

EC number: NA

Molecular weight: Translated: 15323; Mature: 15323

Theoretical pI: Translated: 10.29; Mature: 10.29

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.5 %Met     (Translated Protein)
4.5 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
4.5 %Met     (Mature Protein)
4.5 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MLKTSLKKKPSINIIPMIDVIFFLLVFFMLFTTFRTTPYGIDLQLPKAVTVTGQQENNMI
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCEE
VNINEKGELYYRGDKVTMSRLKNIAKKRTNQTDNLVVIINADKDTKYRYIVQVMDNLRQV
EEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
GIYKLALAAEKEG
CHHEEEEEECCCC
>Mature Secondary Structure
MLKTSLKKKPSINIIPMIDVIFFLLVFFMLFTTFRTTPYGIDLQLPKAVTVTGQQENNMI
CCCCCCCCCCCCEEEEHHHHHHHHHHHHHHHHHHCCCCCCEEEECCCEEEEECCCCCCEE
VNINEKGELYYRGDKVTMSRLKNIAKKRTNQTDNLVVIINADKDTKYRYIVQVMDNLRQV
EEECCCCCEEEECCCHHHHHHHHHHHHHCCCCCCEEEEEECCCCCHHHHHHHHHHHHHHC
GIYKLALAAEKEG
CHHEEEEEECCCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 8905231 [H]