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The map label for this gene is xerC [H]

Identifier: 220931948

GI number: 220931948

Start: 1202417

End: 1203349

Strand: Reverse

Name: xerC [H]

Synonym: Hore_11080

Alternate gene names: 220931948

Gene position: 1203349-1202417 (Counterclockwise)

Preceding gene: 220931950

Following gene: 220931945

Centisome position: 46.67

GC content: 34.08

Gene sequence:

>933_bases
ATGGCAAACAATGTTGAATATTTAAATGCAGTAAAAAGTTTTAAAAAATATTTAGCAACAGAAAGGGGTTATTCCCCTCT
AACTGTAAAGGAATATGAACGGGATTTAAACCTCTTTTATATTTATCTAACCAATGAGATGGGCTTTAAAAATGACTTTT
CTCTAGATAAAATTAATAAATACCATATAGCTGAATTTTTAGGTGATACTATCTTGGTCCATGACAATGCCCCCACCACC
AGAAACCGCAAACTCTATTCAATTAGATCCTTTTTTAAATTTCTTGTAAAATATGAATACATAAAAGTCAATCCAGCAGC
CACCATTGAAGCCAGTAAAACAGAAGTCAGAGCCGAACCTATTTATATGAAGCTTAATGACGCCCAGAAGTATATAGAAA
CAATAAAAAAGCACGGAGGGGTTAACTTAAAAAGGGATCTGGCTATAGTAAAGCTCTTTCTCTATGCAGGTTTACGGGTT
TCAGAACTTGTTGGACTTGATCTGGATGATATTGATTTTAAGGACCAGTCAATTAAATTCTATGGAAAAGGAAAAAAGGA
GAGGTATGTACCTCTCCATCCTGATGTAATTATGTCTATTAAAAATTATTTCCCTGAACGTAATGAAATTCAACCCAAAA
ATGAAGATGCTATTAAGGCCCTGTTTTTATCCAGACATGGTAAAAGAATAAGTGTTAGGACCATTCAGATGATGGTTAAA
AAATACGCTAAACTGGCCGGTGTAAAAAATGCTGATAAAATAACACCACACAAACTCAGGCATACTTTTGCTTCCCTACT
ATATCATAAGACAAAAGACTTAAAAATTTTGCAGGATTTACTGGGGCATGCCGATATTTCAACTACCCAGATATATACAC
ATACCGATGTCAAACAGAGAAAAAAAGCCATAAAGGAACTTCCGGATTTCTAA

Upstream 100 bases:

>100_bases
CTCAATTATATACAGTTTCAAGAAGGATATTTTTATTATTTATTGAATATAGTAAACAGGTTATTTCGCAAAAGATAACT
TTGTCGCAGGAGGTAATAAT

Downstream 100 bases:

>100_bases
TTAACATAATATACTGAGGGTCGTCCCCAGCCTGGTTGAGGATATAATTCCATCAGGTCATAGATTTCATCGGGAAGTTC
AGTATTAACTTCAATGCCCA

Product: phage integrase family protein

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 310; Mature: 309

Protein sequence:

>310_residues
MANNVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTT
RNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGVNLKRDLAIVKLFLYAGLRV
SELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVK
KYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKELPDF

Sequences:

>Translated_310_residues
MANNVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTT
RNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGVNLKRDLAIVKLFLYAGLRV
SELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVK
KYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKELPDF
>Mature_309_residues
ANNVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINKYHIAEFLGDTILVHDNAPTTR
NRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEPIYMKLNDAQKYIETIKKHGGVNLKRDLAIVKLFLYAGLRVS
ELVGLDLDDIDFKDQSIKFYGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVKK
YAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQRKKAIKELPDF

Specific function: Site-specific tyrosine recombinase, which acts by catalyzing the cutting and rejoining of the recombining DNA molecules. The xerC-xerD complex is essential to convert dimers of the bacterial chromosome into monomers to permit their segregation at cell div

COG id: COG4974

COG function: function code L; Site-specific recombinase XerD

Gene ontology:

Cell location: Cytoplasm [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the 'phage' integrase family. XerC subfamily [H]

Homologues:

Organism=Escherichia coli, GI1790244, Length=299, Percent_Identity=33.4448160535117, Blast_Score=154, Evalue=6e-39,
Organism=Escherichia coli, GI1789261, Length=298, Percent_Identity=30.2013422818792, Blast_Score=133, Evalue=1e-32,
Organism=Escherichia coli, GI1790768, Length=163, Percent_Identity=28.2208588957055, Blast_Score=69, Evalue=5e-13,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR011010
- InterPro:   IPR013762
- InterPro:   IPR002104
- InterPro:   IPR010998
- InterPro:   IPR023109
- InterPro:   IPR004107
- InterPro:   IPR011931 [H]

Pfam domain/function: PF02899 Phage_integr_N; PF00589 Phage_integrase [H]

EC number: NA

Molecular weight: Translated: 36124; Mature: 35993

Theoretical pI: Translated: 10.13; Mature: 10.13

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
1.9 %Met     (Translated Protein)
1.9 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
1.6 %Met     (Mature Protein)
1.6 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MANNVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINK
CCCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHH
YHIAEFLGDTILVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEP
HHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEECCCHHHCCCC
IYMKLNDAQKYIETIKKHGGVNLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKF
EEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEE
YGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVK
EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHH
KYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCHHHH
KKAIKELPDF
HHHHHHCCCC
>Mature Secondary Structure 
ANNVEYLNAVKSFKKYLATERGYSPLTVKEYERDLNLFYIYLTNEMGFKNDFSLDKINK
CCCHHHHHHHHHHHHHHHHCCCCCCCCHHHHHCCCEEEEEEEECCCCCCCCCCHHHHHH
YHIAEFLGDTILVHDNAPTTRNRKLYSIRSFFKFLVKYEYIKVNPAATIEASKTEVRAEP
HHHHHHHCCEEEEECCCCCCCCCHHHHHHHHHHHHHHHHEEEECCCCEEECCCHHHCCCC
IYMKLNDAQKYIETIKKHGGVNLKRDLAIVKLFLYAGLRVSELVGLDLDDIDFKDQSIKF
EEEEECHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCCCCHHHHHCCCCCCCCCCCCCEEE
YGKGKKERYVPLHPDVIMSIKNYFPERNEIQPKNEDAIKALFLSRHGKRISVRTIQMMVK
EECCCCCCCCCCCHHHHHHHHHHCCCCCCCCCCCHHHHHHHHHHCCCCEEHHHHHHHHHH
KYAKLAGVKNADKITPHKLRHTFASLLYHKTKDLKILQDLLGHADISTTQIYTHTDVKQR
HHHHHHCCCCCCCCCHHHHHHHHHHHHHHCCCHHHHHHHHHCCCCCCCEEEEECCCHHHH
KKAIKELPDF
HHHHHHCCCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: DNA [C]

Specific reaction: Protein + DNA = Protein-DNA [C]

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA