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The map label for this gene is nrdD [H]

Identifier: 220931945

GI number: 220931945

Start: 1198041

End: 1200071

Strand: Reverse

Name: nrdD [H]

Synonym: Hore_11050

Alternate gene names: 220931945

Gene position: 1200071-1198041 (Counterclockwise)

Preceding gene: 220931948

Following gene: 220931944

Centisome position: 46.55

GC content: 38.21

Gene sequence:

>2031_bases
ATGGTCGGTAAGATTAAAAAGCGAGACGGTCGTCTGGTTCCATTTAAACATGAAAAAATTAAAAATGCTGTAATGAAAGC
AGCTCAAGCCGTAGGGAGGAATGATGTAGAAGAAATTGGCGAAGAAATTACAAGGGAGATTATATCTTACTTAAATATAT
TTTTTAAAGATGAAGGGGTACCAACTGTAGAACAGGTCCAGGATTTAGTTGAAAAAGTATTGATAGAAAAGGGTTATGCT
GAAACTGCTAAAGCATATATTCTTTACAGGGAACAACATGCCAAACTCAGGAATACTAAAAAGCTCTTCAGTGATGCCAT
TAATACCATAAATAGATATCTGGATAAATCTGACTGGAAGGTAAATGAGAATAGTAATATGGGCTTCTCTTTACAGGGAC
TTAATAACCATATTTCATCGGAAATTACAGCTCAATACTGGTTACAGGAAATCTATCCCAAAGAGGTTAGAGAACATCAT
CTTAATGGAGATTTACATATTCATGATTTAAGTAATCTTTCCGTTTATTGTTGTGGTTGGGATTTGCAGGATCTTCTTCT
AACAGGTTTTGGTGGGGTCTCTACCAAAGTAGAAAGTAAACCTCCAAAACATTTTAGAACAGCCCTGGGACAAATAGTAA
ACTTTTTTTATACCCTTCAGGGGGAAGCAGCTGGAGCCCAGGCCTTTGCCAACTTCGACACCTATCTGGCCCCGTTCATA
TATTATGATAACCTTTCATATAAAGATGTTAAACAGGCCATGCAGGAGTTTATTTATAATATGAATGTCCCCACCAGGGT
TGGTTTCCAGACCCCTTTTACCAATATTACAATGGATTTAACACCCTCTCCAGCCATTGCTGATCAACCGGCTATTATAG
GGGGGAAACCCATGGATAAAACCCTTGGGGAATTCCAGAAAGAAATGGATATGTTAAATCGTGCTTTTGCCGAAGTTATG
CTTGAGGGGGATGCTAAGGGAAGGGTCTTCTCCTTTCCTATTCCAACTTATAATATTACCAGTGATTTTAACTGGGACAA
CCCTGTTCTTGAACCTATATGGGAAATGACTGCCAAGTACGGAATACCATATTTCAGTAACTTTATTAATAGTGATATGA
ACCCGGAAGACGCCCGTTCTATGTGCTGCCGCCTCAGACTTGATAACCGGGAATTAAGAAAACGGGGAGGCGGCCTATTC
GGTGCTAATCCTATGACCGGGTCAATTGGAGTTGTCACCATTAATATGCCACGGATAGGCTATTTATCCAGTAATAAAGA
AGAATTTATGCAGAGGGTCTTTCATCTAATGGATATTGCCAGAAAAAGTCTGGAGATCAAAAGAAAAGTATTAGAAAAAC
TTACTGAATCCGGTCTTTACCCCTATTCCAAATTCTATCTCAGGGATATTAAAAAGAGATTTGACAACTACTGGCAAAAC
CACTTTAATACTATTGGTCTTAATGGTATGAATGAAGCTATCATAAATTTTATAGGCAAAGATATTGGCAGTCAGAAAGG
AAGAGAATTTGCCCTTGAAATAATGGACAGGATGAGAGAAAGACTGGTTAAATACCAGGAAGAAACTGGACAACTCTATA
ATCTGGAAGCTACTCCTGCCGAAGGTACTTCATACAGGTTTGCCAGGCTTGATAAGGAAAGATTTAGTGATATTATTACA
GCAAATGAAGAAAGAGTACGTAATGAAAATGCCGATCCTTATTATACAAATTCTACACATTTACCTGTAGGATATACAGA
TGATATTTTTACAGCCCTGAAATTACAGGATCCTTTGCAGACACGTTATACTGGGGGAACTGTTTTCCACGGCTTTATAG
GTGAAAAATTACCTTCAACCACCAGTACTAAACTCCTTGTCAGAAGAATTGCTGAAAACTTTAAACTCCCCTATTATACA
ATAACCCCTACCTTCAGTATATGTCCAATCCATGGATATCTACCAGGAGAGCATGAATATTGCCCCAAATGTGATGCAGA
AATTGGATATAAAGTAGAGAAAACCGGGTGA

Upstream 100 bases:

>100_bases
GTGATTAATGCAGTCCCTTGACACAACCACAAAAATAGGATACAATTGACCCTGTCATTTTATTTCAAGACTGTTATTCT
ATATCAGAGGAGGTTTATTA

Downstream 100 bases:

>100_bases
GGTCTATGAAGATAGCTGGTTTACAGAAAACAAGCCTTATTGATTATCCTGAAAAAATATCAACTGTTGTCTTTACTTAT
GGTTGTAATTTAAGGTGTCC

Product: anaerobic ribonucleoside triphosphate reductase

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 676; Mature: 676

Protein sequence:

>676_residues
MVGKIKKRDGRLVPFKHEKIKNAVMKAAQAVGRNDVEEIGEEITREIISYLNIFFKDEGVPTVEQVQDLVEKVLIEKGYA
ETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKSDWKVNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHH
LNGDLHIHDLSNLSVYCCGWDLQDLLLTGFGGVSTKVESKPPKHFRTALGQIVNFFYTLQGEAAGAQAFANFDTYLAPFI
YYDNLSYKDVKQAMQEFIYNMNVPTRVGFQTPFTNITMDLTPSPAIADQPAIIGGKPMDKTLGEFQKEMDMLNRAFAEVM
LEGDAKGRVFSFPIPTYNITSDFNWDNPVLEPIWEMTAKYGIPYFSNFINSDMNPEDARSMCCRLRLDNRELRKRGGGLF
GANPMTGSIGVVTINMPRIGYLSSNKEEFMQRVFHLMDIARKSLEIKRKVLEKLTESGLYPYSKFYLRDIKKRFDNYWQN
HFNTIGLNGMNEAIINFIGKDIGSQKGREFALEIMDRMRERLVKYQEETGQLYNLEATPAEGTSYRFARLDKERFSDIIT
ANEERVRNENADPYYTNSTHLPVGYTDDIFTALKLQDPLQTRYTGGTVFHGFIGEKLPSTTSTKLLVRRIAENFKLPYYT
ITPTFSICPIHGYLPGEHEYCPKCDAEIGYKVEKTG

Sequences:

>Translated_676_residues
MVGKIKKRDGRLVPFKHEKIKNAVMKAAQAVGRNDVEEIGEEITREIISYLNIFFKDEGVPTVEQVQDLVEKVLIEKGYA
ETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKSDWKVNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHH
LNGDLHIHDLSNLSVYCCGWDLQDLLLTGFGGVSTKVESKPPKHFRTALGQIVNFFYTLQGEAAGAQAFANFDTYLAPFI
YYDNLSYKDVKQAMQEFIYNMNVPTRVGFQTPFTNITMDLTPSPAIADQPAIIGGKPMDKTLGEFQKEMDMLNRAFAEVM
LEGDAKGRVFSFPIPTYNITSDFNWDNPVLEPIWEMTAKYGIPYFSNFINSDMNPEDARSMCCRLRLDNRELRKRGGGLF
GANPMTGSIGVVTINMPRIGYLSSNKEEFMQRVFHLMDIARKSLEIKRKVLEKLTESGLYPYSKFYLRDIKKRFDNYWQN
HFNTIGLNGMNEAIINFIGKDIGSQKGREFALEIMDRMRERLVKYQEETGQLYNLEATPAEGTSYRFARLDKERFSDIIT
ANEERVRNENADPYYTNSTHLPVGYTDDIFTALKLQDPLQTRYTGGTVFHGFIGEKLPSTTSTKLLVRRIAENFKLPYYT
ITPTFSICPIHGYLPGEHEYCPKCDAEIGYKVEKTG
>Mature_676_residues
MVGKIKKRDGRLVPFKHEKIKNAVMKAAQAVGRNDVEEIGEEITREIISYLNIFFKDEGVPTVEQVQDLVEKVLIEKGYA
ETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKSDWKVNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHH
LNGDLHIHDLSNLSVYCCGWDLQDLLLTGFGGVSTKVESKPPKHFRTALGQIVNFFYTLQGEAAGAQAFANFDTYLAPFI
YYDNLSYKDVKQAMQEFIYNMNVPTRVGFQTPFTNITMDLTPSPAIADQPAIIGGKPMDKTLGEFQKEMDMLNRAFAEVM
LEGDAKGRVFSFPIPTYNITSDFNWDNPVLEPIWEMTAKYGIPYFSNFINSDMNPEDARSMCCRLRLDNRELRKRGGGLF
GANPMTGSIGVVTINMPRIGYLSSNKEEFMQRVFHLMDIARKSLEIKRKVLEKLTESGLYPYSKFYLRDIKKRFDNYWQN
HFNTIGLNGMNEAIINFIGKDIGSQKGREFALEIMDRMRERLVKYQEETGQLYNLEATPAEGTSYRFARLDKERFSDIIT
ANEERVRNENADPYYTNSTHLPVGYTDDIFTALKLQDPLQTRYTGGTVFHGFIGEKLPSTTSTKLLVRRIAENFKLPYYT
ITPTFSICPIHGYLPGEHEYCPKCDAEIGYKVEKTG

Specific function: Unknown

COG id: COG1328

COG function: function code F; Oxygen-sensitive ribonucleoside-triphosphate reductase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Contains 1 glycine radical domain [H]

Homologues:

Organism=Escherichia coli, GI1790686, Length=734, Percent_Identity=22.8882833787466, Blast_Score=133, Evalue=4e-32,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR005144
- InterPro:   IPR001150
- InterPro:   IPR019777
- InterPro:   IPR012833 [H]

Pfam domain/function: PF03477 ATP-cone; PF01228 Gly_radical [H]

EC number: =1.17.4.2 [H]

Molecular weight: Translated: 77563; Mature: 77563

Theoretical pI: Translated: 6.88; Mature: 6.88

Prosite motif: PS51161 ATP_CONE

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

1.0 %Cys     (Translated Protein)
3.0 %Met     (Translated Protein)
4.0 %Cys+Met (Translated Protein)
1.0 %Cys     (Mature Protein)
3.0 %Met     (Mature Protein)
4.0 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVGKIKKRDGRLVPFKHEKIKNAVMKAAQAVGRNDVEEIGEEITREIISYLNIFFKDEGV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PTVEQVQDLVEKVLIEKGYAETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKSDWK
CHHHHHHHHHHHHHHHCCCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHHLNGDLHIHDLSNLSVYCCGW
ECCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEEEEECC
DLQDLLLTGFGGVSTKVESKPPKHFRTALGQIVNFFYTLQGEAAGAQAFANFDTYLAPFI
CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEE
YYDNLSYKDVKQAMQEFIYNMNVPTRVGFQTPFTNITMDLTPSPAIADQPAIIGGKPMDK
EECCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEECCCCCCCCCCCCEECCCCCHH
TLGEFQKEMDMLNRAFAEVMLEGDAKGRVFSFPIPTYNITSDFNWDNPVLEPIWEMTAKY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHHHH
GIPYFSNFINSDMNPEDARSMCCRLRLDNRELRKRGGGLFGANPMTGSIGVVTINMPRIG
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
YLSSNKEEFMQRVFHLMDIARKSLEIKRKVLEKLTESGLYPYSKFYLRDIKKRFDNYWQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HFNTIGLNGMNEAIINFIGKDIGSQKGREFALEIMDRMRERLVKYQEETGQLYNLEATPA
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
EGTSYRFARLDKERFSDIITANEERVRNENADPYYTNSTHLPVGYTDDIFTALKLQDPLQ
CCCCHHHHHHCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHH
TRYTGGTVFHGFIGEKLPSTTSTKLLVRRIAENFKLPYYTITPTFSICPIHGYLPGEHEY
HHCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCC
CPKCDAEIGYKVEKTG
CCCCCCCCCEEEECCC
>Mature Secondary Structure
MVGKIKKRDGRLVPFKHEKIKNAVMKAAQAVGRNDVEEIGEEITREIISYLNIFFKDEGV
CCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCCCCC
PTVEQVQDLVEKVLIEKGYAETAKAYILYREQHAKLRNTKKLFSDAINTINRYLDKSDWK
CHHHHHHHHHHHHHHHCCCHHHHHHHEEEHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCE
VNENSNMGFSLQGLNNHISSEITAQYWLQEIYPKEVREHHLNGDLHIHDLSNLSVYCCGW
ECCCCCCCEEECCHHHHHHHHHHHHHHHHHHCHHHHHHHHCCCCEEEEECCCCEEEEECC
DLQDLLLTGFGGVSTKVESKPPKHFRTALGQIVNFFYTLQGEAAGAQAFANFDTYLAPFI
CHHHHHHHCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHHHCEE
YYDNLSYKDVKQAMQEFIYNMNVPTRVGFQTPFTNITMDLTPSPAIADQPAIIGGKPMDK
EECCCCHHHHHHHHHHHHHCCCCCCEECCCCCCCCEEEECCCCCCCCCCCCEECCCCCHH
TLGEFQKEMDMLNRAFAEVMLEGDAKGRVFSFPIPTYNITSDFNWDNPVLEPIWEMTAKY
HHHHHHHHHHHHHHHHHHHHHCCCCCCCEEECCCCCEECCCCCCCCCCHHHHHHHHHHHH
GIPYFSNFINSDMNPEDARSMCCRLRLDNRELRKRGGGLFGANPMTGSIGVVTINMPRIG
CCHHHHHHHCCCCCHHHHHHHHHHHCCCCHHHHHHCCCCCCCCCCCCCEEEEEEECCCCC
YLSSNKEEFMQRVFHLMDIARKSLEIKRKVLEKLTESGLYPYSKFYLRDIKKRFDNYWQN
CCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHHHHHHH
HFNTIGLNGMNEAIINFIGKDIGSQKGREFALEIMDRMRERLVKYQEETGQLYNLEATPA
CCCCCCCCCHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHCCCEEEEECCCC
EGTSYRFARLDKERFSDIITANEERVRNENADPYYTNSTHLPVGYTDDIFTALKLQDPLQ
CCCCHHHHHHCHHHHHHHHCCCHHHHHCCCCCCCCCCCCCCCCCCCHHHHHHHHCCCCHH
TRYTGGTVFHGFIGEKLPSTTSTKLLVRRIAENFKLPYYTITPTFSICPIHGYLPGEHEY
HHCCCCCEEECHHHCCCCCCHHHHHHHHHHHHHCCCCEEEECCCEEEEEEECCCCCCCCC
CPKCDAEIGYKVEKTG
CCCCCCCCCEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 9.0

TargetDB status: NA

Availability: NA

References: 7542800 [H]