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The map label for this gene is rpe [H]

Identifier: 220931841

GI number: 220931841

Start: 1089082

End: 1089735

Strand: Direct

Name: rpe [H]

Synonym: Hore_09980

Alternate gene names: 220931841

Gene position: 1089082-1089735 (Clockwise)

Preceding gene: 220931840

Following gene: 220931842

Centisome position: 42.24

GC content: 35.78

Gene sequence:

>654_bases
ATGGTAGAATTTGCGCCATCTATTTTATCAGCAGATTTTAGTAATTTAAAAGAGGAAGTTGCCAGGGTAAAAGAGGCCAA
TTATTTACATCTTGATGTTATGGATGGTATGTTTGTTCCCAATATTACAATTGGACCTGGTATAATAAAGAGTATTAGAA
AACATACCGATTTGAAGTTTGATACCCATCTGATGATTGAGGAGCCTGAGAGATATATAAAAGATTTTGCTGAAGCCGGT
AGTGATATTATTACTGTTCACTGTGAAGCTACTAAACATTTACACCGGCTTATATACCAGATAAAGGACCAGGGATGTCT
GGCTGGAGTTGCTTTAAATCCAGCAACATCATTAACCAGAATAGAACATGTGTTAAAGGATCTGGATCTGGTTTTAATTA
TGTCCGTAAATCCCGGGTTTGGTGGTCAGAAACTGATTCCAGAAACTCTTAATAAAATTAAAACCATAAAACAAAAGATC
AGGGAGTTAAATCTCAGTATTAAAGTTGAAATCGATGGTGGTATAAATAATTCGAATGTGAAAGATGTTTCCAGGACAGG
GGTTGATATTATTGTGGCTGGTTCTGCTATTTTTGGTCAACCTGATCCAGGTAAGGCTCTGTCGGAACTAAAAGAAAGAG
TAATATCTTCATAA

Upstream 100 bases:

>100_bases
TGTCAGGTTAAGAAAGCGGTAAAGGAAGGTATGATTTCTGAAAAAAGGTATAATTCTTATCTGAATATATATCGAGATCT
TGAAGAACGGGAGTGTTAGC

Downstream 100 bases:

>100_bases
ATAATTGATTTTAATTCTTTACATTATTATAACAAATGTGTTATAATTAAATAAATGTAAAAAATAGAATAGGTTATTTT
TACAAATGCTAACGGGATAC

Product: Ribulose-phosphate 3-epimerase

Products: NA

Alternate protein names: Pentose-5-phosphate 3-epimerase; PPE; R5P3E [H]

Number of amino acids: Translated: 217; Mature: 217

Protein sequence:

>217_residues
MVEFAPSILSADFSNLKEEVARVKEANYLHLDVMDGMFVPNITIGPGIIKSIRKHTDLKFDTHLMIEEPERYIKDFAEAG
SDIITVHCEATKHLHRLIYQIKDQGCLAGVALNPATSLTRIEHVLKDLDLVLIMSVNPGFGGQKLIPETLNKIKTIKQKI
RELNLSIKVEIDGGINNSNVKDVSRTGVDIIVAGSAIFGQPDPGKALSELKERVISS

Sequences:

>Translated_217_residues
MVEFAPSILSADFSNLKEEVARVKEANYLHLDVMDGMFVPNITIGPGIIKSIRKHTDLKFDTHLMIEEPERYIKDFAEAG
SDIITVHCEATKHLHRLIYQIKDQGCLAGVALNPATSLTRIEHVLKDLDLVLIMSVNPGFGGQKLIPETLNKIKTIKQKI
RELNLSIKVEIDGGINNSNVKDVSRTGVDIIVAGSAIFGQPDPGKALSELKERVISS
>Mature_217_residues
MVEFAPSILSADFSNLKEEVARVKEANYLHLDVMDGMFVPNITIGPGIIKSIRKHTDLKFDTHLMIEEPERYIKDFAEAG
SDIITVHCEATKHLHRLIYQIKDQGCLAGVALNPATSLTRIEHVLKDLDLVLIMSVNPGFGGQKLIPETLNKIKTIKQKI
RELNLSIKVEIDGGINNSNVKDVSRTGVDIIVAGSAIFGQPDPGKALSELKERVISS

Specific function: Unknown

COG id: COG0036

COG function: function code G; Pentose-5-phosphate-3-epimerase

Gene ontology:

Cell location: Cytoplasm [C]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the ribulose-phosphate 3-epimerase family [H]

Homologues:

Organism=Homo sapiens, GI40385883, Length=214, Percent_Identity=38.3177570093458, Blast_Score=162, Evalue=2e-40,
Organism=Homo sapiens, GI219879828, Length=214, Percent_Identity=35.981308411215, Blast_Score=149, Evalue=3e-36,
Organism=Homo sapiens, GI24307923, Length=167, Percent_Identity=30.5389221556886, Blast_Score=96, Evalue=3e-20,
Organism=Escherichia coli, GI1789788, Length=213, Percent_Identity=46.0093896713615, Blast_Score=213, Evalue=1e-56,
Organism=Escherichia coli, GI1790523, Length=197, Percent_Identity=32.994923857868, Blast_Score=140, Evalue=5e-35,
Organism=Escherichia coli, GI1790754, Length=207, Percent_Identity=28.5024154589372, Blast_Score=99, Evalue=2e-22,
Organism=Caenorhabditis elegans, GI17552948, Length=220, Percent_Identity=36.8181818181818, Blast_Score=147, Evalue=6e-36,
Organism=Saccharomyces cerevisiae, GI6322341, Length=225, Percent_Identity=39.5555555555556, Blast_Score=174, Evalue=7e-45,
Organism=Drosophila melanogaster, GI24586301, Length=217, Percent_Identity=36.405529953917, Blast_Score=161, Evalue=3e-40,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR013785
- InterPro:   IPR000056
- InterPro:   IPR011060 [H]

Pfam domain/function: PF00834 Ribul_P_3_epim [H]

EC number: =5.1.3.1 [H]

Molecular weight: Translated: 23922; Mature: 23922

Theoretical pI: Translated: 6.63; Mature: 6.63

Prosite motif: PS01085 RIBUL_P_3_EPIMER_1

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.9 %Cys     (Translated Protein)
2.3 %Met     (Translated Protein)
3.2 %Cys+Met (Translated Protein)
0.9 %Cys     (Mature Protein)
2.3 %Met     (Mature Protein)
3.2 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MVEFAPSILSADFSNLKEEVARVKEANYLHLDVMDGMFVPNITIGPGIIKSIRKHTDLKF
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHCCCCC
DTHLMIEEPERYIKDFAEAGSDIITVHCEATKHLHRLIYQIKDQGCLAGVALNPATSLTR
CEEEEEECHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
IEHVLKDLDLVLIMSVNPGFGGQKLIPETLNKIKTIKQKIRELNLSIKVEIDGGINNSNV
HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
KDVSRTGVDIIVAGSAIFGQPDPGKALSELKERVISS
CHHHHCCCEEEEECCEECCCCCCCHHHHHHHHHHHCC
>Mature Secondary Structure
MVEFAPSILSADFSNLKEEVARVKEANYLHLDVMDGMFVPNITIGPGIIKSIRKHTDLKF
CCCCCHHHHHHHHHHHHHHHHHHHCCCEEEEEECCCEECCCCCCCHHHHHHHHHHCCCCC
DTHLMIEEPERYIKDFAEAGSDIITVHCEATKHLHRLIYQIKDQGCLAGVALNPATSLTR
CEEEEEECHHHHHHHHHHCCCCEEEEEEHHHHHHHHHHHHHCCCCCEEEEEECCHHHHHH
IEHVLKDLDLVLIMSVNPGFGGQKLIPETLNKIKTIKQKIRELNLSIKVEIDGGINNSNV
HHHHHHCCCEEEEEEECCCCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEECCCCCCCCC
KDVSRTGVDIIVAGSAIFGQPDPGKALSELKERVISS
CHHHHCCCEEEEECCEECCCCCCCHHHHHHHHHHHCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: 9534248; 9384377 [H]