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The map label for this gene is rpoZ [H]

Identifier: 220931825

GI number: 220931825

Start: 1071190

End: 1071402

Strand: Direct

Name: rpoZ [H]

Synonym: Hore_09820

Alternate gene names: 220931825

Gene position: 1071190-1071402 (Clockwise)

Preceding gene: 220931824

Following gene: 220931826

Centisome position: 41.55

GC content: 40.38

Gene sequence:

>213_bases
TTGTCAATGATAACCTATCCTTCAATGGGAAAGCTTTTAAAAAAAGTGGACAGTCCTTATACTTTAGTTATACTGGCTTC
AAGGAGGGCCCGTCAATTAAACGTGGGAGCCAGGGGACTTATTGAAGAATATAAAAGTAAAAAACCTGTCTCCAGGAGCC
TGGAGGAGATCGCAGCGGGTAAAGTCACCTATGAAATTAAAAGACGTAATTAG

Upstream 100 bases:

>100_bases
AAAATTATGATTATAAAGTTGTTAATGACCGGCTTGATGATGCTGTTGAAAAATTAAAATCTATAATTATAGCTGAAAAA
TGTAAAATAAGGGAGGAGGA

Downstream 100 bases:

>100_bases
TTTTTATAATTCTTTTTAAAATTCAGGGAGAGGTTATAAAATGGATGAAGAAAAAAAACACGTTCTGCTGGGGGTAACTG
GTGGAATTGCAGCCTACAAG

Product: DNA-directed RNA polymerase subunit omega

Products: NA

Alternate protein names: RNAP omega subunit; RNA polymerase omega subunit; Transcriptase subunit omega [H]

Number of amino acids: Translated: 70; Mature: 69

Protein sequence:

>70_residues
MSMITYPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYEIKRRN

Sequences:

>Translated_70_residues
MSMITYPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYEIKRRN
>Mature_69_residues
SMITYPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAGKVTYEIKRRN

Specific function: Promotes RNA polymerase assembly. Latches the N- and C- terminal regions of the beta' subunit thereby facilitating its interaction with the beta and alpha subunits [H]

COG id: COG1758

COG function: function code K; DNA-directed RNA polymerase, subunit K/omega

Gene ontology:

Cell location: Cytoplasmic

Metaboloic importance: NA

Operon status: Not Known

Operon components: None

Similarity: Belongs to the RNA polymerase subunit omega family [H]

Homologues:

None

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR003716
- InterPro:   IPR006110
- InterPro:   IPR012293 [H]

Pfam domain/function: PF01192 RNA_pol_Rpb6 [H]

EC number: =2.7.7.6 [H]

Molecular weight: Translated: 7942; Mature: 7810

Theoretical pI: Translated: 10.89; Mature: 10.89

Prosite motif: NA

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

0.0 %Cys     (Translated Protein)
4.3 %Met     (Translated Protein)
4.3 %Cys+Met (Translated Protein)
0.0 %Cys     (Mature Protein)
2.9 %Met     (Mature Protein)
2.9 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MSMITYPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAG
CCCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
KVTYEIKRRN
CEEEEEECCC
>Mature Secondary Structure 
SMITYPSMGKLLKKVDSPYTLVILASRRARQLNVGARGLIEEYKSKKPVSRSLEEIAAG
CCCCCCCHHHHHHHCCCCEEEEEECCCCCCCCCCCHHHHHHHHHCCCCHHHHHHHHHCC
KVTYEIKRRN
CEEEEEECCC

PDB accession: NA

Resolution: NA

Structure class: Alpha Beta

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 10.0

TargetDB status: NA

Availability: NA

References: NA