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The map label for this gene is sodC [H]

Identifier: 220931651

GI number: 220931651

Start: 867670

End: 868146

Strand: Reverse

Name: sodC [H]

Synonym: Hore_08070

Alternate gene names: 220931651

Gene position: 868146-867670 (Counterclockwise)

Preceding gene: 220931662

Following gene: 220931638

Centisome position: 33.67

GC content: 48.22

Gene sequence:

>477_bases
TTGTTCTTTAGCGATAGAAACAGAGCCCGGGCCCTGGTCAGGGGGGGACCCCTTGCTCCGGAAATAAGGGGGGAGGTAAT
CTTCAAGAATGTTCCGGAGGGAACCTGGGTTTGTGCTGAAATTTATGGCCTCCCACCTTACCAGCCGGCCACAGAAGAAA
GACCTCCAATCGGTCCCCATGGTTTTCATATTCACGGGTTTGGTAACTGTAAGGTTGGAAACCCGGAAGACCCCTTTAAG
GCAGCAGGAGGCCACTGGAATCCCGAAAACCAACCCCATGGAAATCATGCCGGTGATTTTCCCGTTTTATTTTCAAACAA
CGGGTATGCCCGGATGTGCTTTTTTACCAACAAATTCAGGGTTAAAGATATAATAGGAAGGTCAGTTATTATTCATGAGT
ATCCCGATGATTACCGGAGTCAACCAGCCGGGAACTCTGGTCCAAGATTCGCCTGTGGTGTCATTAGATATTATTAA

Upstream 100 bases:

>100_bases
TAATTCCCCCGGTTATTTTGAAGTAACATTATACATCTATATTTCATAATATAAAATAATATCAAATAAATTAATAGACA
AATAGAAAGGAGAATATCCA

Downstream 100 bases:

>100_bases
TTATCTGGTCTTTAAAGCTCCGGGTGGTTCCCTGACCACCGAGGTCCGGAGTTAGACCCTTACCTTTAACCAGGGTTTTC
TTAATAGCCTGGTCAAGTTT

Product: superoxide dismutase (Cu-Zn)

Products: NA

Alternate protein names: NA

Number of amino acids: Translated: 158; Mature: 158

Protein sequence:

>158_residues
MFFSDRNRARALVRGGPLAPEIRGEVIFKNVPEGTWVCAEIYGLPPYQPATEERPPIGPHGFHIHGFGNCKVGNPEDPFK
AAGGHWNPENQPHGNHAGDFPVLFSNNGYARMCFFTNKFRVKDIIGRSVIIHEYPDDYRSQPAGNSGPRFACGVIRYY

Sequences:

>Translated_158_residues
MFFSDRNRARALVRGGPLAPEIRGEVIFKNVPEGTWVCAEIYGLPPYQPATEERPPIGPHGFHIHGFGNCKVGNPEDPFK
AAGGHWNPENQPHGNHAGDFPVLFSNNGYARMCFFTNKFRVKDIIGRSVIIHEYPDDYRSQPAGNSGPRFACGVIRYY
>Mature_158_residues
MFFSDRNRARALVRGGPLAPEIRGEVIFKNVPEGTWVCAEIYGLPPYQPATEERPPIGPHGFHIHGFGNCKVGNPEDPFK
AAGGHWNPENQPHGNHAGDFPVLFSNNGYARMCFFTNKFRVKDIIGRSVIIHEYPDDYRSQPAGNSGPRFACGVIRYY

Specific function: Destroys radicals which are normally produced within the cells and which are toxic to biological systems [H]

COG id: COG2032

COG function: function code P; Cu/Zn superoxide dismutase

Gene ontology:

Cell location: Cell membrane; Lipid-anchor (Potential) [H]

Metaboloic importance: Non_Essential [C]

Operon status: Not Known

Operon components: None

Similarity: Belongs to the Cu-Zn superoxide dismutase family [H]

Homologues:

Organism=Escherichia coli, GI1787934, Length=146, Percent_Identity=32.1917808219178, Blast_Score=67, Evalue=8e-13,
Organism=Saccharomyces cerevisiae, GI6322564, Length=144, Percent_Identity=33.3333333333333, Blast_Score=61, Evalue=7e-11,
Organism=Drosophila melanogaster, GI281363087, Length=113, Percent_Identity=37.1681415929204, Blast_Score=65, Evalue=3e-11,
Organism=Drosophila melanogaster, GI24652342, Length=113, Percent_Identity=37.1681415929204, Blast_Score=65, Evalue=3e-11,

Paralogues:

None

Copy number: NA

Swissprot (AC and ID): NA

Other databases:

- InterPro:   IPR001424 [H]

Pfam domain/function: PF00080 Sod_Cu [H]

EC number: =1.15.1.1 [H]

Molecular weight: Translated: 17673; Mature: 17673

Theoretical pI: Translated: 8.33; Mature: 8.33

Prosite motif: PS00332 SOD_CU_ZN_2

Important sites: NA

Signals:

None

Transmembrane regions:

None

Cys/Met content:

2.5 %Cys     (Translated Protein)
1.3 %Met     (Translated Protein)
3.8 %Cys+Met (Translated Protein)
2.5 %Cys     (Mature Protein)
1.3 %Met     (Mature Protein)
3.8 %Cys+Met (Mature Protein)

Secondary structure:

>Translated Secondary Structure
MFFSDRNRARALVRGGPLAPEIRGEVIFKNVPEGTWVCAEIYGLPPYQPATEERPPIGPH
CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
GFHIHGFGNCKVGNPEDPFKAAGGHWNPENQPHGNHAGDFPVLFSNNGYARMCFFTNKFR
CEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCEE
VKDIIGRSVIIHEYPDDYRSQPAGNSGPRFACGVIRYY
EEECCCCEEEEEECCHHHHCCCCCCCCCEEEEEEEECC
>Mature Secondary Structure
MFFSDRNRARALVRGGPLAPEIRGEVIFKNVPEGTWVCAEIYGLPPYQPATEERPPIGPH
CCCCCCCCEEEEEECCCCCCCCCCEEEEEECCCCCEEEEEEECCCCCCCCCCCCCCCCCC
GFHIHGFGNCKVGNPEDPFKAAGGHWNPENQPHGNHAGDFPVLFSNNGYARMCFFTNKFR
CEEEEECCCCCCCCCCCCHHCCCCCCCCCCCCCCCCCCCCCEEECCCCEEEEEEEECCEE
VKDIIGRSVIIHEYPDDYRSQPAGNSGPRFACGVIRYY
EEECCCCEEEEEECCHHHHCCCCCCCCCEEEEEEEECC

PDB accession: NA

Resolution: NA

Structure class: Unstructured

Cofactors: NA

Metal ions: NA

Kcat value (1/min): NA

Specific activity: NA

Km value (mM): NA

Substrates: NA

Specific reaction: NA

General reaction: NA

Inhibitor: NA

Structure determination priority: 7.0

TargetDB status: NA

Availability: NA

References: 10567266 [H]